RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NT5C2P49902 561 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 KRT83P78385 493 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 HELBQ8NG08 1087 aaPredicted RBP18.33■□□□□ 0.53
SHMT2-232ENST00000557487 SHISA4Q96DD7 197 aa18.33■□□□□ 0.53
SHMT2-232ENST00000557487 V9GY48 417 aaPredicted RBP18.33■□□□□ 0.53
SHMT2-232ENST00000557487 A0A0U1RQG5 324 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-232ENST00000557487 FAM205CA6NFA0 338 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 RHOXF2BP0C7M4 288 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 ZNF174Q15697 407 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 NOM1Q5C9Z4 860 aaKnown RBP18.33■□□□□ 0.52
SHMT2-232ENST00000557487 EARS2Q5JPH6 523 aaKnown RBP18.33■□□□□ 0.52
SHMT2-232ENST00000557487 SMYD4Q8IYR2 804 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-232ENST00000557487 DNAJC7Q99615 494 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 RHOXF2Q9BQY4 288 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 DUOX1Q9NRD9 1551 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 DLEC1Q9Y238 1755 aa18.33■□□□□ 0.52
SHMT2-232ENST00000557487 IGHMBP2P38935 993 aaKnown RBP18.32■□□□□ 0.52
SHMT2-232ENST00000557487 USP14P54578 494 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 TROAPQ12815 778 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 NPY5RQ15761 445 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 CCDC152Q4G0S7 254 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 WWC2Q6AWC2 1192 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 SRLQ86TD4 932 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 DZIP3Q86Y13 1208 aaKnown RBP18.32■□□□□ 0.52
SHMT2-232ENST00000557487 GOLGA6L1Q8N7Z2 621 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 RETREG2Q8NC44 543 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 THAP9Q9H5L6 903 aa18.32■□□□□ 0.52
SHMT2-232ENST00000557487 GNL3LQ9NVN8 582 aaKnown RBP18.32■□□□□ 0.52
SHMT2-232ENST00000557487 A0A0U1RQJ8 604 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 LGALS16A8MUM7 142 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 RPN1P04843 607 aaKnown RBP18.31■□□□□ 0.52
SHMT2-232ENST00000557487 CALML3P27482 149 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 KCNB1Q14721 858 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 EZH2Q15910 746 aaKnown RBP18.31■□□□□ 0.52
SHMT2-232ENST00000557487 PAPD7Q5XG87 772 aaKnown RBP18.31■□□□□ 0.52
SHMT2-232ENST00000557487 ATRIPQ8WXE1 791 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 IQCDQ96DY2 449 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 NUP58Q9BVL2 599 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 VPS16Q9H269 839 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 LUC7L2Q9Y383 392 aaKnown RBP18.31■□□□□ 0.52
SHMT2-232ENST00000557487 RGPD3A6NKT7 1758 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-232ENST00000557487 RGPD4Q7Z3J3 1758 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 MINDY4BA8MYZ0 360 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 MYO1CO00159 1063 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 ZBTB22O15209 634 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 UBXN1Q04323 297 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 STIM1Q13586 685 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 PARP10Q53GL7 1025 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 IQCEQ6IPM2 695 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 RUBCNQ92622 972 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 SLF1Q9BQI6 1058 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 TAB2Q9NYJ8 693 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 CAPN11Q9UMQ6 739 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 FAN1Q9Y2M0 1017 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 RREB1Q92766 1687 aa18.31■□□□□ 0.52
SHMT2-232ENST00000557487 CNTNAP5Q8WYK1 1306 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 ANO9A1A5B4 782 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 CASP1P29466 404 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 MB21D1Q8N884 522 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 MIGA1Q8NAN2 632 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 CCDC102AQ96A19 550 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 SAR1BQ9Y6B6 198 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 ZNF804BA4D1E1 1349 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 MYH2Q9UKX2 1941 aa18.3■□□□□ 0.52
SHMT2-232ENST00000557487 DOT1LQ8TEK3 1739 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 KRT86O43790 486 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 PARP1P09874 1014 aaKnown RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 SCG2P13521 617 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 PPP1R2P41236 205 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 BCAMP50895 628 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 GYS2P54840 703 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 ADSSL1Q8N142 457 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 SH3GLB2Q9NR46 395 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 ZBTB1Q9Y2K1 713 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 RRP15Q9Y3B9 282 aaKnown RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 PDS5AQ29RF7 1337 aaKnown RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 ORC4O43929 436 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 PLEKHA8P1O95397 391 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 CYLC1P35663 651 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 DNM2P50570 870 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 NLRP5P59047 1200 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 MEA1Q16626 185 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 CTR9Q6PD62 1173 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 CCDC170Q8IYT3 715 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 NOA1Q8NC60 698 aaKnown RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 RIOK1Q9BRS2 568 aaKnown RBP18.29■□□□□ 0.52
SHMT2-232ENST00000557487 MAGEF1Q9HAY2 307 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 ITGB4P16144 1822 aa18.29■□□□□ 0.52
SHMT2-232ENST00000557487 PRDM1O75626 825 aa18.28■□□□□ 0.52
SHMT2-232ENST00000557487 PFKFB3Q16875 520 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-232ENST00000557487 ZNF507Q8TCN5 953 aa18.28■□□□□ 0.52
SHMT2-232ENST00000557487 BLZF1Q9H2G9 400 aa18.28■□□□□ 0.52
SHMT2-232ENST00000557487 MAGEC2Q9UBF1 373 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-232ENST00000557487 REXO2Q9Y3B8 237 aaKnown RBP18.28■□□□□ 0.52
SHMT2-232ENST00000557487 IPO7O95373 1038 aaKnown RBP18.27■□□□□ 0.52
SHMT2-232ENST00000557487 STAT6P42226 847 aa18.27■□□□□ 0.52
SHMT2-232ENST00000557487 CDK17Q00537 523 aa18.27■□□□□ 0.52
SHMT2-232ENST00000557487 MTRQ99707 1265 aa18.27■□□□□ 0.52
SHMT2-232ENST00000557487 EFCC1Q9HA90 598 aa18.27■□□□□ 0.52
SHMT2-232ENST00000557487 ZNHIT6Q9NWK9 470 aaKnown RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms