RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 AKR1A1P14550 325 aa21.89■■□□□ 1.09
VIPAS39-209ENST00000556909 KLRC3Q07444 240 aa21.89■■□□□ 1.09
VIPAS39-209ENST00000556909 ZNF697Q5TEC3 545 aa21.89■■□□□ 1.09
VIPAS39-209ENST00000556909 SNRNP48Q6IEG0 339 aaKnown RBP21.89■■□□□ 1.09
VIPAS39-209ENST00000556909 IGKV6D-41A0A0C4DH26 115 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 A0A1W2PQ45 241 aaPredicted RBP21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 A0A1W2PQY0 241 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 GPAA1O43292 621 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 GPATCH3Q96I76 525 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 CNPY2Q9Y2B0 182 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 RIPK3Q9Y572 518 aa21.88■■□□□ 1.09
VIPAS39-209ENST00000556909 RNF113AO15541 343 aaKnown RBP21.87■■□□□ 1.09
VIPAS39-209ENST00000556909 ADAMTS4O75173 837 aa21.87■■□□□ 1.09
VIPAS39-209ENST00000556909 MSL3Q8N5Y2 521 aaKnown RBP21.87■■□□□ 1.09
VIPAS39-209ENST00000556909 SYNGAP1Q96PV0 1343 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 DNAJC25-GNG10A0A024R161 153 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 M0R2C6 588 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 CLTBP09497 229 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 ITGB8P26012 769 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 TDO2P48775 406 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 PRPF38AQ8NAV1 312 aaKnown RBP21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 DCTPP1Q9H773 170 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 TACC3Q9Y6A5 838 aa21.86■■□□□ 1.09
VIPAS39-209ENST00000556909 SYNRGQ9UMZ2 1314 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 ATP2A1O14983 1001 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 PQBP1O60828 265 aaKnown RBP21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 PRDM1O75626 825 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 ZFYP08048 801 aaPredicted RBP21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 GNAT2P19087 354 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 MAMDC4Q6UXC1 1216 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 CEP95Q96GE4 821 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 CLIP2Q9UDT6 1046 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 PLIN4Q96Q06 1357 aa21.85■■□□□ 1.09
VIPAS39-209ENST00000556909 SNAI1O95863 264 aaPredicted RBP21.84■■□□□ 1.09
VIPAS39-209ENST00000556909 CPXCR1Q8N123 301 aa21.84■■□□□ 1.09
VIPAS39-209ENST00000556909 DDX11Q96FC9 970 aa21.84■■□□□ 1.09
VIPAS39-209ENST00000556909 SLC38A10Q9HBR0 1119 aa21.84■■□□□ 1.09
VIPAS39-209ENST00000556909 ZHX1Q9UKY1 873 aaPredicted RBP21.84■■□□□ 1.09
VIPAS39-209ENST00000556909 LRRC37A2A6NM11 1700 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 KIAA0355O15063 1070 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 ZBED4O75132 1171 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 ACLYP53396 1101 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 SMAD3P84022 425 aaKnown RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 ZNF467Q7Z7K2 595 aaPredicted RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 ZNF444Q8N0Y2 327 aaPredicted RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 LRRC47Q8N1G4 583 aaKnown RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 KLHDC9Q8NEP7 349 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 MKL1Q969V6 931 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 KIFC2Q96AC6 838 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 TSEN34Q9BSV6 310 aaKnown RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 ZNF287Q9HBT7 754 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 RAVER2Q9HCJ3 691 aaKnown RBP21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 MTMR4Q9NYA4 1195 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 FAM184BQ9ULE4 1060 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 SYNPO2Q9UMS6 1093 aa21.83■■□□□ 1.09
VIPAS39-209ENST00000556909 VCANP13611 3396 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 PRUNE2Q8WUY3 3088 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 APPP05067 770 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 SLC4A3P48751 1232 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 EPHB4P54760 987 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 IFNL3Q8IZI9 196 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 GMCL1P1Q8NEA9 526 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 FGD4Q96M96 766 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 CDX2Q99626 313 aaPredicted RBP21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 STARD7Q9NQZ5 370 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 FEM1BQ9UK73 627 aa21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 CTDP1Q9Y5B0 961 aaPredicted RBP21.82■■□□□ 1.08
VIPAS39-209ENST00000556909 MYADML2A6NDP7 307 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 MOXD2PA6NHM9 499 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 TTLL1O95922 423 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 RAG1P15918 1043 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 CCSAPQ6IQ19 270 aaPredicted RBP21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 ANKRD33Q7Z3H0 272 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 TTYH1Q9H313 450 aaPredicted RBP21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 SEMA6BQ9H3T3 888 aa21.81■■□□□ 1.08
VIPAS39-209ENST00000556909 PATL2C9JE40 543 aaKnown RBP21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 ADCY6O43306 1168 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 DUSP11O75319 330 aaKnown RBP21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 FAAP100Q0VG06 881 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 ACVR2BQ13705 512 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 KCNA10Q16322 511 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 ANKRD35Q8N283 1001 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 NUP133Q8WUM0 1156 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 RNPC3Q96LT9 517 aaKnown RBP21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 TOX2Q96NM4 488 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 SEC62Q99442 399 aaKnown RBP21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 TMEM39AQ9NV64 488 aa21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.8■■□□□ 1.08
VIPAS39-209ENST00000556909 CST5P28325 142 aaPredicted RBP21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 OAZ1P54368 228 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 FPGSQ05932 587 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 LRRFIP1Q32MZ4 808 aaKnown RBP21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 SLFN13Q68D06 897 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 CHST13Q8NET6 341 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 NEDD1Q8NHV4 660 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 PI4K2BQ8TCG2 481 aa21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 COL25A1Q9BXS0 654 aaPredicted RBP21.79■■□□□ 1.08
VIPAS39-209ENST00000556909 FBXO40Q9UH90 709 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms