RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PARP14Q460N5 1801 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 CCDC69A6NI79 296 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 DHX16O60231 1041 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 HMGB1P09429 215 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PARP1P09874 1014 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PSMA5P28066 241 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 STAT3P40763 770 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 SNAP25P60880 206 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PRKCZQ05513 592 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 ZNF543Q08ER8 600 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 COL9A3Q14050 684 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 SYDE2Q5VT97 1194 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 CCDC174Q6PII3 467 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 FBXO46Q6PJ61 603 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 BLOC1S2Q6QNY1 142 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 DHX32Q7L7V1 743 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PLEKHH3Q7Z736 793 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 CATIPQ7Z7H3 387 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 RAET1EQ8TD07 263 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 IGDCC4Q8TDY8 1250 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 NUP133Q8WUM0 1156 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 KCNB2Q92953 911 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 MOV10L1Q9BXT6 1211 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 RAVER2Q9HCJ3 691 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 SRRDQ9UH36 339 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PRR12Q9ULL5 1215 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 ADAMTS5Q9UNA0 930 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 PTPN22Q9Y2R2 807 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 IVNS1ABPQ9Y6Y0 642 aa13.39□□□□□ -0.27
CCDC88C-212ENST00000556767 SH2B2O14492 632 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 PLA2G6O60733 806 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 SNHG28P0DPA3 235 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 ERCC3P19447 782 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 FLT3LGP49771 235 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 PRMT2P55345 433 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 GPATCH4Q5T3I0 446 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 SNRNP48Q6IEG0 339 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 GPR142Q7Z601 462 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 TMTC2Q8N394 836 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 MTA3Q9BTC8 594 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 LY9Q9HBG7 655 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 GABRQQ9UN88 632 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 PTCH2Q9Y6C5 1203 aa13.38□□□□□ -0.27
CCDC88C-212ENST00000556767 COL11A1P12107 1806 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 A0A0G2JMZ2 1700 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 SLC25A27O95847 323 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 FDX1P10109 184 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 CPA1P15085 419 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 CASTP20810 708 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 ASPRV1Q53RT3 343 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 SYNE3Q6ZMZ3 975 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 RIOX2Q8IUF8 465 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 ZNF654Q8IZM8 581 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 SHCBP1Q8NEM2 672 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 REPS2Q8NFH8 660 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 NUDT12Q9BQG2 462 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 MYL10Q9BUA6 226 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 TEX13BQ9BXU2 312 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 UBA5Q9GZZ9 404 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 CPVLQ9H3G5 476 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 MROH8Q9H579 483 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 SLC38A10Q9HBR0 1119 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 VAT1LQ9HCJ6 419 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 ZNF214Q9UL59 606 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 NAP1L2Q9ULW6 460 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 SLC12A7Q9Y666 1083 aa13.37□□□□□ -0.27
CCDC88C-212ENST00000556767 PCNTO95613 3336 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 SEC24BO95487 1268 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 CYP2B6P20813 491 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 COPB2P35606 906 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 EXOSC10Q01780 885 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 GRM4Q14833 912 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 C8orf34Q49A92 452 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 BTNL9Q6UXG8 535 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 RAB11FIP4Q86YS3 637 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 CTCFLQ8NI51 663 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 HPS5Q9UPZ3 1129 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 WDR19Q8NEZ3 1342 aa13.36□□□□□ -0.27
CCDC88C-212ENST00000556767 KLRF2D3W0D1 207 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 DDAH1O94760 285 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 RXRAP19793 462 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 RPS6KB1P23443 525 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 PTPREP23469 700 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 LIFRP42702 1097 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 OAZ1P54368 228 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 TROAPQ12815 778 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 SLC9C1Q4G0N8 1177 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 Q6ZUG5 572 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 CCDC144CPQ8IYA2 1237 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 STAG2Q8N3U4 1231 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 SOCS4Q8WXH5 440 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 ABHD8Q96I13 439 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 AGBL1Q96MI9 1066 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 HOMER2Q9NSB8 354 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 BIN2Q9UBW5 565 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 CCPG1Q9ULG6 757 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 CYP46A1Q9Y6A2 500 aa13.35□□□□□ -0.27
CCDC88C-212ENST00000556767 DOCK3Q8IZD9 2030 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 SLC15A5A6NIM6 579 aa13.34□□□□□ -0.27
CCDC88C-212ENST00000556767 ATP2A1O14983 1001 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms