RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 DSG3P32926 999 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 SNAP25P60880 206 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 SYDE2Q5VT97 1194 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 CMTR1Q8N1G2 835 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 CCDC82Q8N4S0 544 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 PRPF38AQ8NAV1 312 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 NCOA5Q9HCD5 579 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 PALM3A6NDB9 673 aaPredicted RBP16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 CA12O43570 354 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 PEX10O60683 326 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 PLEKHA8P1O95397 391 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 PIBF1Q8WXW3 757 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 ZNF274Q96GC6 653 aaPredicted RBP16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 MAP3K14Q99558 947 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 SLKQ9H2G2 1235 aaPredicted RBP16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 CPA4Q9UI42 421 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 PRR12Q9ULL5 1215 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 HPS5Q9UPZ3 1129 aa16.34■□□□□ 0.21
VIPAS39-208ENST00000556412 SLC4A3P48751 1232 aa16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 EVCP57679 992 aa16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 ANKRD13CQ8N6S4 541 aa16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 RBM28Q9NW13 759 aaKnown RBP16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 TSKSQ9UJT2 592 aa16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 LIMCH1Q9UPQ0 1083 aa16.33■□□□□ 0.21
VIPAS39-208ENST00000556412 VWA5AO00534 786 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 ZBED4O75132 1171 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 ECM2O94769 699 aaPredicted RBP16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 CD2BP2O95400 341 aaKnown RBP16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 LARGE1O95461 756 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 CDC27P30260 824 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 ADD1P35611 737 aaKnown RBP16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 GNAQP50148 359 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 PLS1Q14651 629 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 CCDC174Q6PII3 467 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 HOMER1Q86YM7 354 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 NECAB1Q8N987 351 aa16.33■□□□□ 0.2
VIPAS39-208ENST00000556412 MYPNQ86TC9 1320 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 CCDC196A0A1B0GTZ2 297 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 TLR2O60603 784 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 PPFIA3O75145 1194 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 RCAN1P53805 252 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 ME3Q16798 604 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 BTNL9Q6UXG8 535 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 TMTC3Q6ZXV5 915 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 NBPF11Q86T75 865 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 ADGRF4Q8IZF3 695 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 CPXCR1Q8N123 301 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 R3HDMLQ9H3Y0 253 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 LOC285556D6RIA3 1793 aa16.32■□□□□ 0.2
VIPAS39-208ENST00000556412 CPLX1O14810 134 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 PLA2G6O60733 806 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 GCLCP48506 637 aaPredicted RBP16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 SRBD1Q8N5C6 995 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 LZTS2Q9BRK4 669 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 TXNRD2Q9NNW7 524 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 WBP1LQ9NX94 342 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 THSD7BQ9C0I4 1608 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 SCRN1Q12765 414 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 LBX2Q6XYB7 198 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 GTF3C2Q8WUA4 911 aaPredicted RBP16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 JMJD4Q9H9V9 463 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 RAVER2Q9HCJ3 691 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 FAM217BQ9NTX9 383 aaPredicted RBP16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 BTBD7Q9P203 1132 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 RBPJLQ9UBG7 517 aa16.31■□□□□ 0.2
VIPAS39-208ENST00000556412 PFKFB2O60825 505 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 TMEM132BQ14DG7 1078 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 PPP2R5BQ15173 497 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 CDC37Q16543 378 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 SLC35G1Q2M3R5 365 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 POTEEQ6S8J3 1075 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 MB21D1Q8N884 522 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 SLC38A10Q9HBR0 1119 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 SAGE1Q9NXZ1 904 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 RABGAP1Q9Y3P9 1069 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 CEP350Q5VT06 3117 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 MYH4Q9Y623 1939 aa16.3■□□□□ 0.2
VIPAS39-208ENST00000556412 hCG_1642624A0A1W2PR95 340 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 CYTH3O43739 400 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 DTNBO60941 627 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 MCM2P49736 904 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 CPLX2Q6PUV4 134 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 JMYQ8N9B5 988 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 IL27Q8NEV9 243 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 GPRC5AQ8NFJ5 357 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 RRP36Q96EU6 259 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 ZSCAN31Q96LW9 406 aaPredicted RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 PIGSQ96S52 555 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 ADGRA2Q96PE1 1338 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 CNMDO75829 334 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 WDR78Q5VTH9 848 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 C17orf99Q6UX52 265 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 CCDC83Q8IWF9 413 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 CCAR1Q8IX12 1150 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 PHKBQ93100 1093 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 GTF3C6Q969F1 213 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 SPZ1Q9BXG8 430 aa16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 RANBP17Q9H2T7 1088 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 SEC63Q9UGP8 760 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-208ENST00000556412 ADAMTS5Q9UNA0 930 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms