RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 JMJD4Q9H9V9 463 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 BRMS1Q9HCU9 246 aa11.74□□□□□ -0.53
NEK9-205ENST00000555405 SMCO2A6NFE2 343 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 STAT2P52630 851 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 PIK3AP1Q6ZUJ8 805 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 METTL16Q86W50 562 aaKnown RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 ZFP91Q96JP5 570 aaPredicted RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 MARCKSP29966 332 aaPredicted RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 FUT2Q10981 343 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 CDC37Q16543 378 aaPredicted RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 QRICH1Q2TAL8 776 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 SYDE2Q5VT97 1194 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 TYW1BQ6NUM6 668 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 FCHSD1Q86WN1 690 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 ZC3H15Q8WU90 426 aaKnown RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 RPAP3Q9H6T3 665 aaPredicted RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 AS3MTQ9HBK9 375 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 PCDHA1Q9Y5I3 950 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 DDX49Q9Y6V7 483 aaKnown RBP11.73□□□□□ -0.53
NEK9-205ENST00000555405 PCNTO95613 3336 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 IRF6O14896 467 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 ADAMTS3O15072 1205 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 KRT85P78386 507 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 UBE2SQ16763 222 aa11.73□□□□□ -0.53
NEK9-205ENST00000555405 DDX60LQ5H9U9 1706 aaKnown RBP11.72□□□□□ -0.53
NEK9-205ENST00000555405 STK38Q15208 465 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 SPATA32Q96LK8 384 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 PAGR1Q9BTK6 254 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 PRR12Q9ULL5 1215 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 CDK5RAP2Q96SN8 1893 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 KIF23Q02241 960 aaPredicted RBP11.72□□□□□ -0.53
NEK9-205ENST00000555405 PFKFB3Q16875 520 aaPredicted RBP11.72□□□□□ -0.53
NEK9-205ENST00000555405 ANKRD13AQ8IZ07 590 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 C2orf69Q8N8R5 385 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.72□□□□□ -0.53
NEK9-205ENST00000555405 CHURC1Q8WUH1 139 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 MKL1Q969V6 931 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 RAVER2Q9HCJ3 691 aaKnown RBP11.72□□□□□ -0.53
NEK9-205ENST00000555405 PPP2R3BQ9Y5P8 575 aa11.72□□□□□ -0.53
NEK9-205ENST00000555405 CFBP00751 764 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 ALAS1P13196 640 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 KRT2P35908 639 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 ME1P48163 572 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 BACE1P56817 501 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 HUNKP57058 714 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 DCAF4Q8WV16 495 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP28Q96RU2 1077 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 LZTS2Q9BRK4 669 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 TMEM260Q9NX78 707 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 PITPNM2Q9BZ72 1349 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 CCDC194A0A1B0GVG4 234 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L17D6RBQ6 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L19D6RCP7 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L20D6RJB6 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 GADD45BO75293 160 aaPredicted RBP11.71□□□□□ -0.53
NEK9-205ENST00000555405 VCAM1P19320 739 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 HOXA13P31271 388 aaPredicted RBP11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L24Q0WX57 530 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 RESTQ13127 1097 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 ZRSR1Q15695 479 aaKnown RBP11.71□□□□□ -0.53
NEK9-205ENST00000555405 ZNF174Q15697 407 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 USP17L6PQ6QN14 398 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 FBXO11Q86XK2 927 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 OPTNQ96CV9 577 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 GBA2Q9HCG7 927 aaPredicted RBP11.71□□□□□ -0.53
NEK9-205ENST00000555405 EMILIN3Q9NT22 766 aa11.71□□□□□ -0.53
NEK9-205ENST00000555405 MMP1P03956 469 aa11.71□□□□□ -0.54
NEK9-205ENST00000555405 UBXN2AP68543 259 aa11.71□□□□□ -0.54
NEK9-205ENST00000555405 LDHDQ86WU2 507 aa11.71□□□□□ -0.54
NEK9-205ENST00000555405 BICD2Q8TD16 824 aa11.71□□□□□ -0.54
NEK9-205ENST00000555405 ABT1Q9ULW3 272 aaKnown RBP11.71□□□□□ -0.54
NEK9-205ENST00000555405 SNCAIPQ9Y6H5 919 aa11.71□□□□□ -0.54
NEK9-205ENST00000555405 SHISA4Q96DD7 197 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 AGBL1Q96MI9 1066 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 PANK2Q9BZ23 570 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 CLIC4Q9Y696 253 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 ECM29Q5VYK3 1845 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 ZBTB5O15062 677 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 MARCH6O60337 910 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 RCAN1P53805 252 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 EARS2Q5JPH6 523 aaKnown RBP11.7□□□□□ -0.54
NEK9-205ENST00000555405 ATG4CQ96DT6 458 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 MRVI1Q9Y6F6 885 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 ZC3H4Q9UPT8 1303 aaKnown RBP11.7□□□□□ -0.54
NEK9-205ENST00000555405 PNMA6FA0A0J9YX94 578 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 INF2Q27J81 1249 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 SPECC1Q5M775 1068 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 NSMFQ6X4W1 530 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 BLIDQ8IZY5 108 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 TBC1D5Q92609 795 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 ZNF396Q96N95 335 aaPredicted RBP11.7□□□□□ -0.54
NEK9-205ENST00000555405 SPZ1Q9BXG8 430 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 ZSCAN16Q9H4T2 348 aaPredicted RBP11.7□□□□□ -0.54
NEK9-205ENST00000555405 C6orf50Q9HD87 102 aa11.7□□□□□ -0.54
NEK9-205ENST00000555405 MCM7P33993 719 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms