RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NCAPG2Q86XI2 1143 aa18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 DIS3Q9Y2L1 958 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-209ENST00000554872 RAD21O60216 631 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 MSCO60682 206 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 DPP9Q86TI2 863 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 INCENPQ9NQS7 918 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 NRBP1Q9UHY1 535 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 STX8Q9UNK0 236 aa18.97■□□□□ 0.63
CCDC88C-209ENST00000554872 COBLO75128 1261 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 ZBED4O75132 1171 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 STAT2P52630 851 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 LHX8Q68G74 356 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 RCSD1Q6JBY9 416 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 MFSD6Q6ZSS7 791 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 TBC1D10CQ8IV04 446 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 CHURC1Q8WUH1 139 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 TTC14Q96N46 770 aa18.96■□□□□ 0.63
CCDC88C-209ENST00000554872 CYBAP13498 195 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 SLC1A4P43007 532 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 MNX1P50219 401 aaPredicted RBP18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 DCAF4Q8WV16 495 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 MAML3Q96JK9 1138 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 MMP19Q99542 508 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 CTNNA3Q9UI47 895 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 FRMPD3Q5JV73 1810 aa18.95■□□□□ 0.62
CCDC88C-209ENST00000554872 ZNF213O14771 459 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 NMT2O60551 498 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 TOP1P11387 765 aaKnown RBP18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 CCND3P30281 292 aaPredicted RBP18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 KCTD2Q14681 263 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 ZNF792Q3KQV3 632 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 SNRNP48Q6IEG0 339 aaKnown RBP18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 NECAB2Q7Z6G3 386 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 MSL3Q8N5Y2 521 aaKnown RBP18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 ESR2Q92731 530 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 FBXO40Q9UH90 709 aa18.94■□□□□ 0.62
CCDC88C-209ENST00000554872 DNAJC25-GNG10A0A024R161 153 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 HAND2P61296 217 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 SAMD1Q6SPF0 538 aaPredicted RBP18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 BTNL9Q6UXG8 535 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 CHST13Q8NET6 341 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 RUFY2Q8WXA3 655 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 KIFC2Q96AC6 838 aa18.93■□□□□ 0.62
CCDC88C-209ENST00000554872 TMEM232C9JQI7 657 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 COL6A1P12109 1028 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 MCCP23508 829 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 CYP2C19P33261 490 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 CCDC178Q5BJE1 867 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 ZNF467Q7Z7K2 595 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 PAWRQ96IZ0 340 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 TOMM22Q9NS69 142 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 DDX20Q9UHI6 824 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 RIPK3Q9Y572 518 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 NEDD4P46934 1319 aa18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 ZNFX1Q9P2E3 1918 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-209ENST00000554872 PLXNA1Q9UIW2 1896 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 SNHG28P0DPA3 235 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 CHMLP26374 656 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 IMMTQ16891 758 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 TKFCQ3LXA3 575 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 RRP12Q5JTH9 1297 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 DGKHQ86XP1 1220 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 TRPV1Q8NER1 839 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 TMEM47Q9BQJ4 181 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 IL25Q9H293 177 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 CTDP1Q9Y5B0 961 aaPredicted RBP18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 ZNF536O15090 1300 aa18.91■□□□□ 0.62
CCDC88C-209ENST00000554872 CEP290O15078 2479 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 SEPT4O43236 478 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 MAMDC4Q6UXC1 1216 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 DIS3LQ8TF46 1054 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 ANKS1AQ92625 1134 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 TINF2Q9BSI4 451 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 CNNM2Q9H8M5 875 aa18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 RAVER2Q9HCJ3 691 aaKnown RBP18.9■□□□□ 0.62
CCDC88C-209ENST00000554872 PDHBP11177 359 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 KCTD1Q719H9 257 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 CENPQQ7L2Z9 268 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 IQCA1Q86XH1 822 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 C11orf49Q9H6J7 331 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 PRR12Q9ULL5 1215 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 NR2E3Q9Y5X4 410 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 SYNGAP1Q96PV0 1343 aa18.89■□□□□ 0.61
CCDC88C-209ENST00000554872 H0YGN5 161 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 PGK2P07205 417 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 CPXCR1Q8N123 301 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 DPF3Q92784 378 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 KRT23Q9C075 422 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 RANBP17Q9H2T7 1088 aaKnown RBP18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 ACAD9Q9H845 621 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 PNMA2Q9UL42 364 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 PFASO15067 1338 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 ALPK3Q96L96 1907 aa18.88■□□□□ 0.61
CCDC88C-209ENST00000554872 DNM1LO00429 736 aa18.87■□□□□ 0.61
CCDC88C-209ENST00000554872 SGSM2O43147 1006 aa18.87■□□□□ 0.61
CCDC88C-209ENST00000554872 ZNF543Q08ER8 600 aa18.87■□□□□ 0.61
CCDC88C-209ENST00000554872 IKQ13123 557 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-209ENST00000554872 KDM4AO75164 1064 aa18.86■□□□□ 0.61
CCDC88C-209ENST00000554872 ICAM1P05362 532 aa18.86■□□□□ 0.61
CCDC88C-209ENST00000554872 CCDC96Q2M329 555 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms