RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 CARMIL3Q8ND23 1372 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 DDX39AO00148 427 aaKnown RBP16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 PHKA1P46020 1223 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 CROCCP2Q86T23 111 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 PYCARDQ9ULZ3 195 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 CFBP00751 764 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 FAM98CQ17RN3 349 aaKnown RBP16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 INTS8Q75QN2 995 aaKnown RBP16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 ALDH3A1P30838 453 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 TCP10Q12799 353 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 CLUL1Q15846 466 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 MYOCDQ8IZQ8 938 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 CDC25BP30305 580 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 GALNT17Q6IS24 598 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 FAM169AQ9Y6X4 670 aa16.98■□□□□ 0.31
ARHGEF40-202ENST00000553709 PSDA5PKW4 1024 aaPredicted RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 EFCAB8A8MWE9 144 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 OR52Z1P0C646 297 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 MYCLP12524 364 aaPredicted RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 MFSD14BQ5SR56 506 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 POLR3EQ9NVU0 708 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 TECP42680 631 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 CHRNDQ07001 517 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 SSX2IPQ9Y2D8 614 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 PPP6R2O75170 966 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 MAP3K9P80192 1104 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 SYMPKQ92797 1274 aaKnown RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 LSM14BQ9BX40 385 aaKnown RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 PCP11498 1178 aaKnown RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 LACTBP83111 547 aaPredicted RBP16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 APOA5Q6Q788 366 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 NEK8Q86SG6 692 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 TRIM7Q9C029 511 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 ASIC3Q9UHC3 531 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 PCDHA5Q9Y5H7 936 aa16.97■□□□□ 0.31
ARHGEF40-202ENST00000553709 MTMR3Q13615 1198 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 AXIN2Q9Y2T1 843 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 USP32Q8NFA0 1604 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 KLRF2D3W0D1 207 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 PTGDRQ13258 359 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 PICK1Q9NRD5 415 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 RPN1P04843 607 aaKnown RBP16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 IRX3P78415 501 aaPredicted RBP16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 TRPC3Q13507 836 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 UAP1Q16222 522 aaPredicted RBP16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 CCDC14Q49A88 953 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 GPBP1Q86WP2 473 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 HAUS4Q9H6D7 363 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 INPP5BP32019 993 aa16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 GPKOWQ92917 476 aaPredicted RBP eCLIP16.96■□□□□ 0.31
ARHGEF40-202ENST00000553709 LONP1P36776 959 aaKnown RBP16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 POTEDQ86YR6 584 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 USP40Q9NVE5 1235 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 STIM2Q9P246 746 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 XRCC5P13010 732 aaKnown RBP16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 M0R2C6 588 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 APBB1IPQ7Z5R6 666 aaPredicted RBP16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 FOXP1Q9H334 677 aaPredicted RBP16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 NRBP1Q9UHY1 535 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 PCDHB13Q9Y5F0 798 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 GTF2IP78347 998 aa16.95■□□□□ 0.3
ARHGEF40-202ENST00000553709 ARL1P40616 181 aaPredicted RBP16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 TPH2Q8IWU9 490 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 CPXCR1Q8N123 301 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 GDAP1L1Q96MZ0 367 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 RABEP2Q9H5N1 569 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 TMOD4Q9NZQ9 345 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 DDX41Q9UJV9 622 aaKnown RBP16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 HYOU1Q9Y4L1 999 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 PRAMEF22A3QJZ6 481 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 TAOK1Q7L7X3 1001 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 PCDHA12Q9UN75 941 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 CCDC105Q8IYK2 499 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 PSTPIP2Q9H939 334 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 USP21Q9UK80 565 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 RCOR1Q9UKL0 485 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 ITSN1Q15811 1721 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 POLA2Q14181 598 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 ARHGAP44Q17R89 818 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 SPATA24Q86W54 205 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 GSDMAQ96QA5 445 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 FAM204AQ9H8W3 233 aa16.94■□□□□ 0.3
ARHGEF40-202ENST00000553709 FMNL1O95466 1100 aaPredicted RBP16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 STAT1P42224 750 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 GRM1Q13255 1194 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 H0YIN7 160 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 DPCR1Q3MIW9 517 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 C11orf57Q6ZUT1 292 aaPredicted RBP16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 RNF26Q9BY78 433 aaPredicted RBP16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 IKBKBO14920 756 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 GAS7O60861 476 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 GOLGA8HP0CJ92 632 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 MCTP2Q6DN12 878 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 NSMFQ6X4W1 530 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 TEKT1Q969V4 418 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 MKRN1Q9UHC7 482 aaKnown RBP16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 AMFRQ9UKV5 643 aa16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 U2AF1L4Q8WU68 220 aaKnown RBP16.93■□□□□ 0.3
ARHGEF40-202ENST00000553709 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.93■□□□□ 0.33e-7■■■□□ 17.9
ARHGEF40-202ENST00000553709 ZBED4O75132 1171 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms