RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 RRP12Q5JTH9 1297 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 MFSD6Q6ZSS7 791 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 NCAPG2Q86XI2 1143 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 HMX1Q9NP08 348 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 TOMM22Q9NS69 142 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 FEM1BQ9UK73 627 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 RIPK3Q9Y572 518 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 PLXNB2O15031 1838 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 RBBP6Q7Z6E9 1792 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 A0A0G2JMZ2 1700 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 NEDD4P46934 1319 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 ZNF213O14771 459 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 ATP2A1O14983 1001 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 PLA2G6O60733 806 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 CENPBP07199 599 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 CAPN2P17655 700 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 RCSD1Q6JBY9 416 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 RASGRP2Q7LDG7 609 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 RNF41Q9H4P4 317 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 SLC38A10Q9HBR0 1119 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 DOCK3Q8IZD9 2030 aa12.14□□□□□ -0.47
CCDC88C-206ENST00000553437 RAD50Q92878 1312 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 COL6A3P12111 3177 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 TMEM232C9JQI7 657 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 ZBED4O75132 1171 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 TFRCP02786 760 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 FCER1AP12319 257 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 CCND3P30281 292 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 SLC1A4P43007 532 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 MNX1P50219 401 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 MFSD14CQ5VZR4 134 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 OLFML2BQ68BL8 750 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 CENPQQ7L2Z9 268 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 DPP9Q86TI2 863 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 KIFC2Q96AC6 838 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 TTC14Q96N46 770 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 TMEM47Q9BQJ4 181 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 TEX13BQ9BXU2 312 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 CTNNA3Q9UI47 895 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 OGDHLQ9ULD0 1010 aa12.13□□□□□ -0.47
CCDC88C-206ENST00000553437 FARP2O94887 1054 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 TOP1P11387 765 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 CYP2C19P33261 490 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 COPB2P35606 906 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 NT5C2P49902 561 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 PTH1RQ03431 593 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 ZNF792Q3KQV3 632 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 HABP4Q5JVS0 413 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 SNRNP48Q6IEG0 339 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 KCTD1Q719H9 257 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 FAM160B2Q86V87 743 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 SKAP1Q86WV1 359 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 TRPV1Q8NER1 839 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 CHURC1Q8WUH1 139 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 ESR2Q92731 530 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 CHMP4CQ96CF2 233 aa12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 RAVER2Q9HCJ3 691 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-206ENST00000553437 ZNF536O15090 1300 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 MYH8P13535 1937 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 SGSM2O43147 1006 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 PGK2P07205 417 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 FDX1P10109 184 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 FXR2P51116 673 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 STAT2P52630 851 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 OAZ1P54368 228 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 IMMTQ16891 758 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 TTBK2Q6IQ55 1244 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 BTNL9Q6UXG8 535 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 CPXCR1Q8N123 301 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 DCAF4Q8WV16 495 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 RUFY2Q8WXA3 655 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 ANKS1AQ92625 1134 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 MAML3Q96JK9 1138 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 MMP19Q99542 508 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 SLC5A4Q9NY91 659 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 ZSWIM5Q9P217 1185 aa12.11□□□□□ -0.47
CCDC88C-206ENST00000553437 DNAJC25-GNG10A0A024R161 153 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 B4E1Z4 1266 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 KDM4AO75164 1064 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 SNHG28P0DPA3 235 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 PDHBP11177 359 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 CYBAP13498 195 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 KCTD2Q14681 263 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 DGKHQ86XP1 1220 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 ANKLE1Q8NAG6 615 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 DIS3LQ8TF46 1054 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 PAWRQ96IZ0 340 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 ZKSCAN3Q9BRR0 538 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 PRR12Q9ULL5 1215 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 MTMR7Q9Y216 660 aa12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 DIS3Q9Y2L1 958 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 RANBP2P49792 3224 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-206ENST00000553437 CYP21A2P08686 494 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 SNAP25P60880 206 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 CCDC96Q2M329 555 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 PRAMEF19Q5SWL8 479 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 CHST13Q8NET6 341 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 MAP4K1Q92918 833 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 AGBL1Q96MI9 1066 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms