RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 GFRA1P56159 465 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 MAP4K2Q12851 820 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 PPP2R5DQ14738 602 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 SF1Q15637 639 aaKnown RBP8.47□□□□□ -1.05
LIMA1-210ENST00000552045 PRRT3Q5FWE3 981 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 WWC2Q6AWC2 1192 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 DDX46Q7L014 1031 aaKnown RBP8.47□□□□□ -1.05
LIMA1-210ENST00000552045 BRAPQ7Z569 592 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 AHI1Q8N157 1196 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 KCTD13Q8WZ19 329 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 CCDC140Q96MF4 163 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 CEP41Q9BYV8 373 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 PRDM14Q9GZV8 571 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 NKX2-4Q9H2Z4 354 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 AKTIPQ9H8T0 292 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 LGR6Q9HBX8 967 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 PRDM10Q9NQV6 1147 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 PRR13Q9NZ81 148 aa8.47□□□□□ -1.05
LIMA1-210ENST00000552045 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-210ENST00000552045 BLACEA4D250 179 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 NFICP08651 508 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 POU3F2P20265 443 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-210ENST00000552045 HOXC12P31275 282 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 GRB10Q13322 594 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 GRIK4Q16099 956 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 HSP90AB2PQ58FF8 381 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 Q6ZS46 218 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 FGD2Q7Z6J4 655 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 FIBCD1Q8N539 461 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 ATL2Q8NHH9 583 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 EZH1Q92800 747 aaPredicted RBP8.46□□□□□ -1.06
LIMA1-210ENST00000552045 YIPF2Q9BWQ6 316 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 STK17AQ9UEE5 414 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 MKL2Q9ULH7 1088 aa8.46□□□□□ -1.06
LIMA1-210ENST00000552045 TNPO3Q9Y5L0 923 aaKnown RBP8.46□□□□□ -1.06
LIMA1-210ENST00000552045 EYA4O95677 639 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 ASLP04424 464 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 GLB1P16278 677 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 KCNJ6P48051 423 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 SNW1Q13573 536 aaKnown RBP8.45□□□□□ -1.06
LIMA1-210ENST00000552045 FAM50AQ14320 339 aaKnown RBP8.45□□□□□ -1.06
LIMA1-210ENST00000552045 NTRK3Q16288 839 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 PODNQ7Z5L7 613 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 STRA8Q7Z7C7 330 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 FBLIM1Q8WUP2 373 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 LEO1Q8WVC0 666 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-210ENST00000552045 PTPRN2Q92932 1015 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 GFOD1Q9NXC2 390 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 THRAP3Q9Y2W1 955 aaKnown RBP8.45□□□□□ -1.06
LIMA1-210ENST00000552045 WASHC2CQ9Y4E1 1318 aa8.45□□□□□ -1.06
LIMA1-210ENST00000552045 DYNC1LI2O43237 492 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 LRRN2O75325 713 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 NPTXRO95502 500 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 SCG5P05408 212 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 SNRPB2P08579 225 aaKnown RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 CPEP16870 476 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 SEZ6L2Q6UXD5 910 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 FMNL3Q8IVF7 1028 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 BEND7Q8N7W2 519 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 TMEM145Q8NBT3 493 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 LENG1Q96BZ8 264 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 SCLYQ96I15 445 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 FAM46AQ96IP4 442 aaKnown RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 CYP26B1Q9NR63 512 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 FAN1Q9Y2M0 1017 aa8.44□□□□□ -1.06
LIMA1-210ENST00000552045 SF3B6Q9Y3B4 125 aaKnown RBP8.44□□□□□ -1.06
LIMA1-210ENST00000552045 OPA1O60313 960 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 EOMESO95936 686 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 CPP00450 1065 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 CYP7A1P22680 504 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 NEK4P51957 841 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 ZNF460Q14592 562 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 PCBP1Q15365 356 aaKnown RBP eCLIP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 SGO2Q562F6 1265 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 SLC35F1Q5T1Q4 408 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 GPAT2Q6NUI2 795 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 MAMDC2Q7Z304 686 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 SCARF2Q96GP6 870 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 C1orf159Q96HA4 380 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 ZDHHC15Q96MV8 337 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 UBL7Q96S82 380 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 NOP53Q9NZM5 478 aaKnown RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 USP21Q9UK80 565 aa8.43□□□□□ -1.06
LIMA1-210ENST00000552045 GPR55Q9Y2T6 319 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-210ENST00000552045 VAMP4O75379 141 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 IGFALSP35858 605 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 GUCY2FP51841 1108 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 AMPD2Q01433 879 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 CDK5R2Q13319 367 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 PRSS53Q2L4Q9 553 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 PKN3Q6P5Z2 889 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 MAGEB10Q96LZ2 347 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-210ENST00000552045 DSCC1Q9BVC3 393 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 MTFR1LQ9H019 292 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 TPX2Q9ULW0 747 aaKnown RBP8.42□□□□□ -1.06
LIMA1-210ENST00000552045 EID1Q9Y6B2 187 aa8.42□□□□□ -1.06
LIMA1-210ENST00000552045 CNTNAP5Q8WYK1 1306 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 CNTNAP4Q9C0A0 1308 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 SIGLEC6O43699 453 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms