RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 LIPIQ6XZB0 460 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 HS2ST1Q7LGA3 356 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 SPRED1Q7Z699 444 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 ADGRG2Q8IZP9 1017 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 SH3RF3Q8TEJ3 882 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-209ENST00000552008 SAMD11Q96NU1 681 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 DPH2Q9BQC3 489 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-209ENST00000552008 PCED1AQ9H1Q7 454 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 METTL5Q9NRN9 209 aaKnown RBP3.55□□□□□ -1.84
LIMA1-209ENST00000552008 KLHL14Q9P2G3 628 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 KCNH3Q9ULD8 1083 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 ENC1O14682 589 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 MPOP05164 745 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 GRK4P32298 578 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 LIMS1P48059 325 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 ERVFRD-1P60508 538 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 CCDC85BQ15834 202 aaPredicted RBP3.54□□□□□ -1.84
LIMA1-209ENST00000552008 VWA3BQ502W6 1294 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 RASIP1Q5U651 963 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 C9orf131Q5VYM1 1079 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 TPTE2Q6XPS3 522 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 DNAJB8Q8NHS0 232 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 CEP44Q9C0F1 390 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 GGT7Q9UJ14 662 aa3.54□□□□□ -1.84
LIMA1-209ENST00000552008 A0A1B0GTL3 188 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 RLBP1P12271 317 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 TMEM62Q0P6H9 643 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 GNL2Q13823 731 aaKnown RBP3.53□□□□□ -1.84
LIMA1-209ENST00000552008 WIPI1Q5MNZ9 446 aaPredicted RBP3.53□□□□□ -1.84
LIMA1-209ENST00000552008 MEI1Q5TIA1 1274 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 CEP128Q6ZU80 1094 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 RELL1Q8IUW5 271 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 DVL3Q92997 716 aaPredicted RBP3.53□□□□□ -1.84
LIMA1-209ENST00000552008 CCSER2Q9H7U1 834 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 SUSD2Q9UGT4 822 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 PPM1HQ9ULR3 514 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 ZNF281Q9Y2X9 895 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 SNCAIPQ9Y6H5 919 aa3.53□□□□□ -1.84
LIMA1-209ENST00000552008 USP31Q70CQ4 1352 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 FBXO24O75426 580 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 CTSHP09668 335 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 RPL10P27635 214 aaKnown RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 KIR2DL1P43626 348 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 KIR2DL2P43627 348 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 ST13P50502 369 aaKnown RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 HDLBPQ00341 1268 aaKnown RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 FANCCQ00597 558 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 PTPN11Q06124 597 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 PWP1Q13610 501 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 RAB3GAP1Q15042 981 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 MAP3K11Q16584 847 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.52□□□□□ -1.85
LIMA1-209ENST00000552008 USP48Q86UV5 1035 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 NT5DC4Q86YG4 428 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 CHST13Q8NET6 341 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 MAP6Q96JE9 813 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 LNPKQ9C0E8 428 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 ZMYM5Q9UJ78 669 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 CYP8B1Q9UNU6 501 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 CEP131Q9UPN4 1083 aa3.52□□□□□ -1.85
LIMA1-209ENST00000552008 MINDY4BA8MYZ0 360 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 NOBOXO60393 691 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 PFKLP17858 780 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 FBLN1P23142 703 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 IGFBP6P24592 240 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 GBP2P32456 591 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 CDK8P49336 464 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 GJA9P57773 515 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 ZC3H6P61129 1189 aaKnown RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 KLF10Q13118 480 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 SV2BQ7L1I2 683 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 MRPL41Q8IXM3 137 aaKnown RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF654Q8IZM8 581 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 TMEM87BQ96K49 555 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 PLCD4Q9BRC7 762 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF747Q9BV97 191 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 NOC4LQ9BVI4 516 aaKnown RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 VPS11Q9H270 941 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 TJP2Q9UDY2 1190 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.51□□□□□ -1.85
LIMA1-209ENST00000552008 TACC3Q9Y6A5 838 aa3.51□□□□□ -1.85
LIMA1-209ENST00000552008 NUDT19A8MXV4 375 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 LRRN2O75325 713 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 MSL3P1P0C860 447 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 ARL4AP40617 200 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 HNRNPA0Q13151 305 aaKnown RBP3.5□□□□□ -1.85
LIMA1-209ENST00000552008 SLC6A19Q695T7 634 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 WAPLQ7Z5K2 1190 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF575Q86XF7 245 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 VPS37DQ86XT2 251 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 C3orf58Q8NDZ4 430 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 FNIP1Q8TF40 1166 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 KISS1RQ969F8 398 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-209ENST00000552008 TGIF2Q9GZN2 237 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 CAPN10Q9HC96 672 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 USP35Q9P2H5 1018 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 C11orf21Q9P2W6 132 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 INPP5FQ9Y2H2 1132 aa3.5□□□□□ -1.85
LIMA1-209ENST00000552008 IRS2Q9Y4H2 1338 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 SHISA3A0PJX4 238 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms