RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 LGR4Q9BXB1 951 aa7.14□□□□□ -1.27
LIMA1-205ENST00000550592 ASCC2Q9H1I8 757 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-205ENST00000550592 CHST7Q9NS84 486 aa7.14□□□□□ -1.27
LIMA1-205ENST00000550592 ATG3Q9NT62 314 aa7.14□□□□□ -1.27
LIMA1-205ENST00000550592 PRAMEF1O95521 474 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 FGFR1P11362 822 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 GRB10Q13322 594 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 NKPD1Q17RQ9 610 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 FOXB2Q5VYV0 432 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 DAGLBQ8NCG7 672 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 KISS1RQ969F8 398 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-205ENST00000550592 OSBPL1AQ9BXW6 950 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 DUSP15Q9H1R2 295 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-205ENST00000550592 NOL6Q9H6R4 1146 aaKnown RBP7.13□□□□□ -1.27
LIMA1-205ENST00000550592 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.13□□□□□ -1.27
LIMA1-205ENST00000550592 SF3B6Q9Y3B4 125 aaKnown RBP7.13□□□□□ -1.27
LIMA1-205ENST00000550592 ST14Q9Y5Y6 855 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 U3KQE9 123 aa7.13□□□□□ -1.27
LIMA1-205ENST00000550592 SHISA3A0PJX4 238 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 FAM155AB1AL88 458 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-205ENST00000550592 TBX1O43435 398 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 PROCP04070 461 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 GRIA2P42262 883 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 TCEA2Q15560 299 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 RSPO4Q2I0M5 234 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-205ENST00000550592 YOD1Q5VVQ6 348 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-205ENST00000550592 SCUBE1Q8IWY4 988 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 DHRS4Q9BTZ2 278 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 HDAC8Q9BY41 377 aa7.12□□□□□ -1.27
LIMA1-205ENST00000550592 ANKRD62A6NC57 917 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 KCNH1O95259 989 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 PPP2R5DQ14738 602 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 FAM209AQ5JX71 171 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 GTF2IRD2BQ6EKJ0 949 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 GTF2IRD2Q86UP8 949 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 SPACA3Q8IXA5 215 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 ZNF655Q8N720 491 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-205ENST00000550592 OSBP2Q969R2 916 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 EXOC2Q96KP1 924 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 CCDC140Q96MF4 163 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 FEZ1Q99689 392 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 CDC6Q99741 560 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 DSCC1Q9BVC3 393 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 GPATCH2Q9NW75 528 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 MINPP1Q9UNW1 487 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 PLAGL2Q9UPG8 496 aa7.11□□□□□ -1.27
LIMA1-205ENST00000550592 TRBV23-1A0A0A0MS06 115 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 ASMTLO95671 621 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 GSNP06396 782 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 CEACAM5P06731 702 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 PABPC1P11940 636 aaKnown RBP7.1□□□□□ -1.27
LIMA1-205ENST00000550592 L1CAMP32004 1257 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 CTSKP43235 329 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 CLEC16AQ2KHT3 1053 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 TKFCQ3LXA3 575 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 NSMFQ6X4W1 530 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 ARHGAP27Q6ZUM4 889 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 ZDHHC13Q8IUH4 622 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 FAM181AQ8N9Y4 354 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 BTN2A2Q8WVV5 523 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 ZDHHC15Q96MV8 337 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 IPO9Q96P70 1041 aaKnown RBP7.1□□□□□ -1.27
LIMA1-205ENST00000550592 SPOCK3Q9BQ16 436 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 NKX2-4Q9H2Z4 354 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 TRIT1Q9H3H1 467 aaKnown RBP7.1□□□□□ -1.27
LIMA1-205ENST00000550592 CYP26B1Q9NR63 512 aa7.1□□□□□ -1.27
LIMA1-205ENST00000550592 MRPS23Q9Y3D9 190 aaKnown RBP7.1□□□□□ -1.27
LIMA1-205ENST00000550592 DNAJC25-GNG10A0A024R161 153 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 PRR19A6NJB7 356 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 H0Y8X5 98 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 MSTNO14793 375 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 PPP1R12AO14974 1030 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-205ENST00000550592 PRODHO43272 600 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 VAMP4O75379 141 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 SCG5P05408 212 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 NCLP19338 710 aaKnown RBP7.09□□□□□ -1.27
LIMA1-205ENST00000550592 ITIH2P19823 946 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 HOXC12P31275 282 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 CLCN7P51798 805 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 GYS2P54840 703 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 AMPD2Q01433 879 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 POU4F1Q01851 419 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 THAP5Q7Z6K1 395 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 TSPYL5Q86VY4 417 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-205ENST00000550592 TCTN2Q96GX1 697 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 HSPA12BQ96MM6 686 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 PUS7Q96PZ0 661 aaKnown RBP7.09□□□□□ -1.27
LIMA1-205ENST00000550592 SLKQ9H2G2 1235 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-205ENST00000550592 TMX1Q9H3N1 280 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 SNX11Q9Y5W9 270 aa7.09□□□□□ -1.27
LIMA1-205ENST00000550592 CYP26A1O43174 497 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 DYRK3O43781 588 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 DLX3O60479 287 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 GAB4Q2WGN9 574 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 CDKAL1Q5VV42 579 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 IER2Q9BTL4 223 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 LRRC4CQ9HCJ2 640 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 SEMA3GQ9NS98 782 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 PIM2Q9P1W9 311 aa7.08□□□□□ -1.28
LIMA1-205ENST00000550592 MEIS1O00470 390 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms