RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CHURC1Q8WUH1 139 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 ATG4CQ96DT6 458 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 LARGE1O95461 756 aa24.68■■□□□ 1.54
VPS29-206ENST00000549578 ALDH1A1P00352 501 aa24.68■■□□□ 1.54
VPS29-206ENST00000549578 CDC27P30260 824 aa24.68■■□□□ 1.54
VPS29-206ENST00000549578 CCT2P78371 535 aaKnown RBP24.68■■□□□ 1.54
VPS29-206ENST00000549578 BTNL9Q6UXG8 535 aa24.68■■□□□ 1.54
VPS29-206ENST00000549578 FAM217BQ9NTX9 383 aaPredicted RBP24.68■■□□□ 1.54
VPS29-206ENST00000549578 RNF186Q9NXI6 227 aa24.68■■□□□ 1.54
VPS29-206ENST00000549578 PLA2G6O60733 806 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 PLEKHA8P1O95397 391 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 CRHR2Q13324 411 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 SYDE2Q5VT97 1194 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 POTEEQ6S8J3 1075 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 NBPF11Q86T75 865 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 CMTR1Q8N1G2 835 aaKnown RBP24.67■■□□□ 1.54
VPS29-206ENST00000549578 PRPF38AQ8NAV1 312 aaKnown RBP24.67■■□□□ 1.54
VPS29-206ENST00000549578 NCOA5Q9HCD5 579 aaKnown RBP24.67■■□□□ 1.54
VPS29-206ENST00000549578 HOXC10Q9NYD6 342 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 PRR12Q9ULL5 1215 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 LIMCH1Q9UPQ0 1083 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 NID2Q14112 1375 aa24.67■■□□□ 1.54
VPS29-206ENST00000549578 CA12O43570 354 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 TRPA1O75762 1119 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 MAP2K1Q02750 393 aaPredicted RBP24.66■■□□□ 1.54
VPS29-206ENST00000549578 ME3Q16798 604 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 SLC35G1Q2M3R5 365 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 ZFYVE28Q9HCC9 887 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 MYPNQ86TC9 1320 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 PEX10O60683 326 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 ADD1P35611 737 aaKnown RBP24.66■■□□□ 1.54
VPS29-206ENST00000549578 SNAP25P60880 206 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 TMTC3Q6ZXV5 915 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 IL27Q8NEV9 243 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 SLKQ9H2G2 1235 aaPredicted RBP24.66■■□□□ 1.54
VPS29-206ENST00000549578 R3HDMLQ9H3Y0 253 aa24.66■■□□□ 1.54
VPS29-206ENST00000549578 RBM28Q9NW13 759 aaKnown RBP24.66■■□□□ 1.54
VPS29-206ENST00000549578 ADGRA2Q96PE1 1338 aa24.65■■□□□ 1.54
VPS29-206ENST00000549578 DHX16O60231 1041 aaKnown RBP24.65■■□□□ 1.54
VPS29-206ENST00000549578 TBC1D8O95759 1140 aa24.65■■□□□ 1.54
VPS29-206ENST00000549578 CCDC82Q8N4S0 544 aa24.65■■□□□ 1.54
VPS29-206ENST00000549578 SRBD1Q8N5C6 995 aaKnown RBP24.65■■□□□ 1.54
VPS29-206ENST00000549578 NECAB1Q8N987 351 aa24.65■■□□□ 1.54
VPS29-206ENST00000549578 VAT1LQ9HCJ6 419 aa24.65■■□□□ 1.54
VPS29-206ENST00000549578 VWA5AO00534 786 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 CYTH3O43739 400 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 PFKFB2O60825 505 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 GNAQP50148 359 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 SCRN1Q12765 414 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 LBX2Q6XYB7 198 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 ADGRF4Q8IZF3 695 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 PAGR1Q9BTK6 254 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 ADAMTS5Q9UNA0 930 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 A0A0G2JMZ2 1700 aa24.64■■□□□ 1.53
VPS29-206ENST00000549578 BAZ2BQ9UIF8 2168 aaKnown RBP24.63■■□□□ 1.53
VPS29-206ENST00000549578 COL11A1P12107 1806 aaPredicted RBP24.63■■□□□ 1.53
VPS29-206ENST00000549578 TLR2O60603 784 aa24.63■■□□□ 1.53
VPS29-206ENST00000549578 LZTS2Q9BRK4 669 aa24.63■■□□□ 1.53
VPS29-206ENST00000549578 TXNRD2Q9NNW7 524 aa24.63■■□□□ 1.53
VPS29-206ENST00000549578 RBPJLQ9UBG7 517 aa24.63■■□□□ 1.53
VPS29-206ENST00000549578 CPA4Q9UI42 421 aa24.63■■□□□ 1.53
VPS29-206ENST00000549578 CCDC196A0A1B0GTZ2 297 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 GCLCP48506 637 aaPredicted RBP24.62■■□□□ 1.53
VPS29-206ENST00000549578 PPP2R5BQ15173 497 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 ANKRD13CQ8N6S4 541 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 PIBF1Q8WXW3 757 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 JMJD4Q9H9V9 463 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 SLC38A10Q9HBR0 1119 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 WBP1LQ9NX94 342 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 BTBD7Q9P203 1132 aa24.62■■□□□ 1.53
VPS29-206ENST00000549578 CNMDO75829 334 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 JMYQ8N9B5 988 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 REPS2Q8NFH8 660 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 GTF3C2Q8WUA4 911 aaPredicted RBP24.61■■□□□ 1.53
VPS29-206ENST00000549578 GTF3C6Q969F1 213 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 BEGAINQ9BUH8 593 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 SPZ1Q9BXG8 430 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 RIOX1Q9H6W3 641 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 ZBED4O75132 1171 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 MCM2P49736 904 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 FUT2Q10981 343 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 TMEM132BQ14DG7 1078 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 CCDC174Q6PII3 467 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 MB21D1Q8N884 522 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 ZSCAN31Q96LW9 406 aaPredicted RBP24.61■■□□□ 1.53
VPS29-206ENST00000549578 CFHR5Q9BXR6 569 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 RANBP17Q9H2T7 1088 aaKnown RBP24.61■■□□□ 1.53
VPS29-206ENST00000549578 SAGE1Q9NXZ1 904 aa24.61■■□□□ 1.53
VPS29-206ENST00000549578 CTDP1Q9Y5B0 961 aaPredicted RBP24.61■■□□□ 1.53
VPS29-206ENST00000549578 CNTNAP5Q8WYK1 1306 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 PPFIA3O75145 1194 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 ST3GAL1Q11201 340 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 CDC37Q16543 378 aaPredicted RBP24.6■■□□□ 1.53
VPS29-206ENST00000549578 C17orf99Q6UX52 265 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 HOMER1Q86YM7 354 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 CPXCR1Q8N123 301 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 RABGAP1Q9Y3P9 1069 aa24.6■■□□□ 1.53
VPS29-206ENST00000549578 CPLX1O14810 134 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 DTNBO60941 627 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 BCRP11274 1271 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms