RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ADGRF1Q5T601 910 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 MCF2L2Q86YR7 1114 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 SP8Q8IXZ3 490 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 FBXO27Q8NI29 283 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 SHISA4Q96DD7 197 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 DNAJC2Q99543 621 aaKnown RBP6.38□□□□□ -1.39
VPS29-205ENST00000548539 MIR1-1HGQ9H1L0 117 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 ADAMTS20P59510 1910 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 F13A1P00488 732 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 CRKP46108 304 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 NASPP49321 788 aaPredicted RBP6.37□□□□□ -1.39
VPS29-205ENST00000548539 APOBRQ0VD83 1088 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 SIRT2Q8IXJ6 389 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 GMLQ99445 158 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 GINM1Q9NU53 330 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 EFR3BQ9Y2G0 817 aa6.37□□□□□ -1.39
VPS29-205ENST00000548539 HRKO00198 91 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 N4BP3O15049 544 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 GREM1O60565 184 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 FGRP09769 529 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 VMACQ2NL98 169 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 SPATS1Q496A3 300 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 FAM196AQ6ZSG2 479 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 MCATQ8IVS2 390 aaKnown RBP6.36□□□□□ -1.39
VPS29-205ENST00000548539 RASGRP4Q8TDF6 673 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 TEPSINQ96N21 525 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 NT5C1AQ9BXI3 368 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 KCNQ5Q9NR82 932 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 EBF1Q9UH73 591 aa6.36□□□□□ -1.39
VPS29-205ENST00000548539 EPHB3P54753 998 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 PLP2Q04941 152 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 PDE4BQ07343 736 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 SEZ6Q53EL9 994 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 PMFBP1Q8TBY8 1022 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 LINC01599Q8WXQ3 324 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 NKD1Q969G9 470 aa6.35□□□□□ -1.39
VPS29-205ENST00000548539 ZC3H12DA2A288 527 aaKnown RBP6.34□□□□□ -1.39
VPS29-205ENST00000548539 SSBP05455 408 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS29-205ENST00000548539 TEKQ02763 1124 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 NLRX1Q86UT6 975 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 SYT8Q8NBV8 401 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 GATAD2BQ8WXI9 593 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 ADAM7Q9H2U9 754 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 CNTD2Q9H8S5 307 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 MRVI1Q9Y6F6 885 aa6.34□□□□□ -1.39
VPS29-205ENST00000548539 MCM4P33991 863 aa6.33□□□□□ -1.4
VPS29-205ENST00000548539 EFEMP1Q12805 493 aa6.33□□□□□ -1.4
VPS29-205ENST00000548539 CNKSR3Q6P9H4 555 aa6.33□□□□□ -1.4
VPS29-205ENST00000548539 CCDC81Q6ZN84 652 aa6.33□□□□□ -1.4
VPS29-205ENST00000548539 SEC16BQ96JE7 1060 aa6.33□□□□□ -1.4
VPS29-205ENST00000548539 EPB41L4AQ9HCS5 686 aaPredicted RBP6.33□□□□□ -1.4
VPS29-205ENST00000548539 LUC7LQ9NQ29 371 aaKnown RBP6.33□□□□□ -1.4
VPS29-205ENST00000548539 FAM221AA4D161 298 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 LRRN2O75325 713 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 STK10O94804 968 aaKnown RBP6.32□□□□□ -1.4
VPS29-205ENST00000548539 BPNT1O95861 308 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 INSRRP14616 1297 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 VIPR1P32241 457 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 SLC14A2Q15849 920 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 OLFML2BQ68BL8 750 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 FRMD5Q7Z6J6 570 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 CYB5D2Q8WUJ1 264 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 CPLX3Q8WVH0 158 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 ACSF2Q96CM8 615 aaPredicted RBP6.32□□□□□ -1.4
VPS29-205ENST00000548539 SPATA32Q96LK8 384 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 BDH2Q9BUT1 245 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 BRMS1Q9HCU9 246 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 CRTAC1Q9NQ79 661 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 ADAM30Q9UKF2 790 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 PPT2Q9UMR5 302 aa6.32□□□□□ -1.4
VPS29-205ENST00000548539 SHROOM4Q9ULL8 1493 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 NOTOA8MTQ0 251 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 IRS4O14654 1257 aaPredicted RBP6.31□□□□□ -1.4
VPS29-205ENST00000548539 GRIN3BO60391 1043 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 CILPO75339 1184 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 SOX9P48436 509 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 MPP2Q14168 576 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 PUM1Q14671 1186 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS29-205ENST00000548539 CLEC16AQ2KHT3 1053 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 CWF19L2Q2TBE0 894 aaKnown RBP6.31□□□□□ -1.4
VPS29-205ENST00000548539 FBXW10Q5XX13 1052 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 GK5Q6ZS86 529 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 DPH6Q7L8W6 267 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 CCDC84Q86UT8 332 aaPredicted RBP6.31□□□□□ -1.4
VPS29-205ENST00000548539 SLITRK4Q8IW52 837 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 RNF141Q8WVD5 230 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 ANAPC16Q96DE5 110 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 LNPKQ9C0E8 428 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 ZNF408Q9H9D4 720 aa6.31□□□□□ -1.4
VPS29-205ENST00000548539 USP2O75604 605 aaPredicted RBP6.3□□□□□ -1.4
VPS29-205ENST00000548539 ETFBP38117 255 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 REC114Q7Z4M0 266 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 FAM129CQ86XR2 697 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 LINC01356Q8N9X3 169 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 MZB1Q8WU39 189 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 GPR20Q99678 358 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 G6PC3Q9BUM1 346 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 LRRC3Q9BY71 257 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 ZMYM5Q9UJ78 669 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 ZNF281Q9Y2X9 895 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms