RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ZNF296Q8WUU4 475 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-213ENST00000546820 ATG4CQ96DT6 458 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 UPF3BQ9BZI7 483 aaKnown RBP16.06■□□□□ 0.16
PTCH1-213ENST00000546820 SENP2Q9HC62 589 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 GPHNQ9NQX3 736 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-213ENST00000546820 MORF4L1Q9UBU8 362 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 ADAMTS5Q9UNA0 930 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 GNAQP50148 359 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 ERVK-9P63128 1117 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 ERVK-24P63145 666 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 COL9A3Q14050 684 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-213ENST00000546820 GRM4Q14833 912 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 PPP2R5BQ15173 497 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 ANKRD1Q15327 319 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 SYDE2Q5VT97 1194 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 TTBK2Q6IQ55 1244 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 IL27Q8NEV9 243 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 BRF1Q92994 677 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 LZTS2Q9BRK4 669 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 PRR12Q9ULL5 1215 aa16.05■□□□□ 0.16
PTCH1-213ENST00000546820 NAP1L2Q9ULW6 460 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-213ENST00000546820 PALM3A6NDB9 673 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-213ENST00000546820 KLRF2D3W0D1 207 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 ZBTB43O43298 467 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 GOLGA8HP0CJ92 632 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 SLC16A2P36021 539 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 NEK4P51957 841 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 PLS1Q14651 629 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 FANCBQ8NB91 859 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 AGXT2Q9BYV1 514 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 ALDH8A1Q9H2A2 487 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-213ENST00000546820 CWC22Q9HCG8 908 aaKnown RBP16.04■□□□□ 0.16
PTCH1-213ENST00000546820 PRDM10Q9NQV6 1147 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 MAD2L2Q9UI95 211 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 PNMA2Q9UL42 364 aa16.04■□□□□ 0.16
PTCH1-213ENST00000546820 KLF18A0A0U1RQI7 1052 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 CCDC196A0A1B0GTZ2 297 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 DHX16O60231 1041 aaKnown RBP16.03■□□□□ 0.16
PTCH1-213ENST00000546820 FMNL1O95466 1100 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-213ENST00000546820 GNRH1P01148 92 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 HOXD10P28358 340 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 MAPK4P31152 587 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 COPB2P35606 906 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 STAT3P40763 770 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 RCAN1P53805 252 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 OAZ1P54368 228 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 FCGRTP55899 365 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 LACTBP83111 547 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-213ENST00000546820 Q3C1V9 767 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 APOA5Q6Q788 366 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 UBA5Q9GZZ9 404 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 SPATC1LQ9H0A9 340 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 SLC38A10Q9HBR0 1119 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 TXNRD2Q9NNW7 524 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 RBM28Q9NW13 759 aaKnown RBP16.03■□□□□ 0.16
PTCH1-213ENST00000546820 BTBD7Q9P203 1132 aa16.03■□□□□ 0.16
PTCH1-213ENST00000546820 ATP2A1O14983 1001 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 SLC25A27O95847 323 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 SMARCA1P28370 1054 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 PSMC4P43686 418 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 APOBRQ0VD83 1088 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 TMEM132BQ14DG7 1078 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 STAG2Q8N3U4 1231 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 CD99L2Q8TCZ2 262 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 COA7Q96BR5 231 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 TEX13BQ9BXU2 312 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 MROH8Q9H579 483 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 VAT1LQ9HCJ6 419 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 BRPF3Q9ULD4 1205 aa16.02■□□□□ 0.16
PTCH1-213ENST00000546820 CNMDO75829 334 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 EVCP57679 992 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 TRAF1Q13077 416 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 RASGRP2Q7LDG7 609 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 MICU3Q86XE3 530 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 ADGRF4Q8IZF3 695 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 CPXCR1Q8N123 301 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 SHCBP1Q8NEM2 672 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 ZNF274Q96GC6 653 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-213ENST00000546820 TBC1D32Q96NH3 1257 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 MYL10Q9BUA6 226 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 EFCC1Q9HA90 598 aa16.01■□□□□ 0.15
PTCH1-213ENST00000546820 GOLGA8AA7E2F4 631 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 GOLGA8BA8MQT2 603 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 SLC4A3P48751 1232 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 METAP2P50579 478 aaKnown RBP eCLIP16■□□□□ 0.15
PTCH1-213ENST00000546820 TOB2Q14106 344 aaPredicted RBP16■□□□□ 0.15
PTCH1-213ENST00000546820 RABEP1Q15276 862 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 RTN1Q16799 776 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 WDR78Q5VTH9 848 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 POTEEQ6S8J3 1075 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 RIOX2Q8IUF8 465 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 CCDC144CPQ8IYA2 1237 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 REPS2Q8NFH8 660 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 MOV10L1Q9BXT6 1211 aaKnown RBP16■□□□□ 0.15
PTCH1-213ENST00000546820 RANBP17Q9H2T7 1088 aaKnown RBP16■□□□□ 0.15
PTCH1-213ENST00000546820 RAVER2Q9HCJ3 691 aaKnown RBP16■□□□□ 0.15
PTCH1-213ENST00000546820 ZNF214Q9UL59 606 aaPredicted RBP16■□□□□ 0.15
PTCH1-213ENST00000546820 IVNS1ABPQ9Y6Y0 642 aa16■□□□□ 0.15
PTCH1-213ENST00000546820 TNPO2O14787 897 aaKnown RBP15.99■□□□□ 0.15
PTCH1-213ENST00000546820 STRNO43815 780 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms