RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-222ENST00000545308 LCNL1Q6ZST4 164 aa5.87□□□□□ -1.47
SNHG1-222ENST00000545308 LRRC56Q8IYG6 542 aaPredicted RBP5.87□□□□□ -1.47
SNHG1-222ENST00000545308 FBXO15Q8NCQ5 510 aaPredicted RBP5.87□□□□□ -1.47
SNHG1-222ENST00000545308 ALPK1Q96QP1 1244 aa5.87□□□□□ -1.47
SNHG1-222ENST00000545308 TMEM260Q9NX78 707 aa5.87□□□□□ -1.47
SNHG1-222ENST00000545308 REV1Q9UBZ9 1251 aa5.87□□□□□ -1.47
SNHG1-222ENST00000545308 DIAPH1O60610 1272 aaKnown RBP5.86□□□□□ -1.47
SNHG1-222ENST00000545308 DDAH1O94760 285 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 CBX7O95931 251 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 CST3P01034 146 aaPredicted RBP5.86□□□□□ -1.47
SNHG1-222ENST00000545308 C1QTNF9P0C862 333 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 ACRP10323 421 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 GUCY2CP25092 1073 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 ZYXQ15942 572 aaKnown RBP5.86□□□□□ -1.47
SNHG1-222ENST00000545308 SPATC1Q76KD6 591 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 FILIP1Q7Z7B0 1213 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 SIAH1Q8IUQ4 282 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 FAM178BQ8IXR5 827 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 JMYQ8N9B5 988 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 APPBP2Q92624 585 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 UBE2FQ969M7 185 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 COX4I2Q96KJ9 171 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 TM9SF2Q99805 663 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 IFT57Q9NWB7 429 aa5.86□□□□□ -1.47
SNHG1-222ENST00000545308 EIF4G1Q04637 1599 aaKnown RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 LTBP3Q9NS15 1303 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 LRRFIP1Q32MZ4 808 aaKnown RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 MTERF2Q49AM1 385 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 RNF187Q5TA31 235 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 PRAMEF13Q5VWM6 474 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 OVOS1Q6IE37 1185 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 KIAA0907Q7Z7F0 614 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 TAB3Q8N5C8 712 aaPredicted RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 ATG4CQ96DT6 458 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 DIRC2Q96SL1 478 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 NSUN3Q9H649 340 aaKnown RBP5.85□□□□□ -1.47
SNHG1-222ENST00000545308 ZSWIM5Q9P217 1185 aa5.85□□□□□ -1.47
SNHG1-222ENST00000545308 CUX2O14529 1486 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 KDM2BQ8NHM5 1336 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 SLC22A31A6NKX4 558 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 NFIBO00712 420 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 NME1P15531 152 aaKnown RBP5.84□□□□□ -1.47
SNHG1-222ENST00000545308 PLCG1P19174 1290 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 CYP7A1P22680 504 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 GRK4P32298 578 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 KIR3DL1P43629 444 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 TKFCQ3LXA3 575 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 C2orf27AQ580R0 203 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 UNC5AQ6ZN44 842 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 HOMER1Q86YM7 354 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 XAGE3Q8WTP9 111 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 BRINP2Q9C0B6 783 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 SLAMF8Q9P0V8 285 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 GMIPQ9P107 970 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 PFDN2Q9UHV9 154 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 ZMYM5Q9UJ78 669 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 COL4A3BPQ9Y5P4 624 aa5.84□□□□□ -1.47
SNHG1-222ENST00000545308 hCG_2014768A0A024R1R8 64 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 DNAJC6O75061 913 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 ZSCAN22P10073 491 aaPredicted RBP5.83□□□□□ -1.48
SNHG1-222ENST00000545308 GYS2P54840 703 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 IGBP1P78318 339 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 TNK2Q07912 1038 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 TMEM201Q5SNT2 666 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 ST13P5Q8NFI4 369 aaPredicted RBP5.83□□□□□ -1.48
SNHG1-222ENST00000545308 ABHD4Q8TB40 342 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 THAP3Q8WTV1 239 aaPredicted RBP5.83□□□□□ -1.48
SNHG1-222ENST00000545308 SLC9A7Q96T83 725 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 CNNM2Q9H8M5 875 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 PCDH12Q9NPG4 1184 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 PCDHB10Q9UN67 800 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 TACC3Q9Y6A5 838 aa5.83□□□□□ -1.48
SNHG1-222ENST00000545308 DNAJC25-GNG10A0A024R161 153 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 CHURC1-FNTBB4DL54 471 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 RBAK-RBAKDNI3L0D1 243 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 TNFRSF10CO14798 259 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 RAB11FIP3O75154 756 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 ESR1P03372 595 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 RAC2P15153 192 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 SSRP1Q08945 709 aaKnown RBP5.82□□□□□ -1.48
SNHG1-222ENST00000545308 RALGPS1Q5JS13 557 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 CDCP2Q5VXM1 449 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 INTS3Q68E01 1043 aaKnown RBP5.82□□□□□ -1.48
SNHG1-222ENST00000545308 C16orf86Q6ZW13 317 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 NLRC3Q7RTR2 1065 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 TMPRSS7Q7RTY8 843 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 CDH24Q86UP0 819 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 PIWIL2Q8TC59 973 aaKnown RBP5.82□□□□□ -1.48
SNHG1-222ENST00000545308 EPB41L4BQ9H329 900 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 SPC25Q9HBM1 224 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 DCP1AQ9NPI6 582 aaPredicted RBP5.82□□□□□ -1.48
SNHG1-222ENST00000545308 NOP58Q9Y2X3 529 aaKnown RBP5.82□□□□□ -1.48
SNHG1-222ENST00000545308 PTCH2Q9Y6C5 1203 aa5.82□□□□□ -1.48
SNHG1-222ENST00000545308 FAM86C2PA6NEL3 165 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 NPIPB6E9PJ23 425 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 TMEM253P0C7T8 217 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 ARSHQ5FYA8 562 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 LILRA6Q6PI73 481 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 VHLLQ6RSH7 139 aa5.81□□□□□ -1.48
SNHG1-222ENST00000545308 AMIGO3Q86WK7 504 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms