RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 B4DLN1 442 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 M0R2C6 588 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 ITGA6P23229 1130 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 CD248Q9HCU0 757 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 STX8Q9UNK0 236 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 AXIN2Q9Y2T1 843 aa15.79■□□□□ 0.12
LIMS1-215ENST00000544547 IRS4O14654 1257 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 HMGB2P26583 209 aaKnown RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 TMEM266Q2M3C6 531 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 CCDC93Q567U6 631 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 LRWD1Q9UFC0 647 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 ATP1A1P05023 1023 aaKnown RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 TCP1P17987 556 aaKnown RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 IFNAR2P48551 515 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 KRT31Q15323 416 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 TRMT1LQ7Z2T5 733 aaKnown RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 METTL16Q86W50 562 aaKnown RBP15.78■□□□□ 0.12
LIMS1-215ENST00000544547 ZNF185O15231 689 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 ATP11AP98196 1134 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 ZMYM1Q5SVZ6 1142 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 APOA5Q6Q788 366 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 CCDC63Q8NA47 563 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 PLEKHG1Q9ULL1 1385 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 MOCS3O95396 460 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 DPH5Q9H2P9 285 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 TFR2Q9UP52 801 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 ZMYM6O95789 1325 aa15.78■□□□□ 0.12
LIMS1-215ENST00000544547 TNIP1Q15025 636 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 HEATR3Q7Z4Q2 680 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 TEX11Q8IYF3 940 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 KIRREL3Q8IZU9 778 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 TAOK3Q9H2K8 898 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 KLC4Q9NSK0 619 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 A0A1W2PRG0 241 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 ARID4AP29374 1257 aaPredicted RBP15.77■□□□□ 0.12
LIMS1-215ENST00000544547 PPARAQ07869 468 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 EHHADHQ08426 723 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 COL9A3Q14050 684 aaPredicted RBP15.77■□□□□ 0.12
LIMS1-215ENST00000544547 NUP58Q9BVL2 599 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 SWAP70Q9UH65 585 aa15.77■□□□□ 0.12
LIMS1-215ENST00000544547 RASSF7Q02833 373 aa15.77■□□□□ 0.11
LIMS1-215ENST00000544547 DAAM2Q86T65 1068 aa15.77■□□□□ 0.11
LIMS1-215ENST00000544547 CHP1Q99653 195 aa15.77■□□□□ 0.11
LIMS1-215ENST00000544547 ABHD10Q9NUJ1 306 aa15.77■□□□□ 0.11
LIMS1-215ENST00000544547 DEPDC5O75140 1603 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 ZNF532Q9HCE3 1301 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 KCNK3O14649 394 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 UQCRFS1P1P0C7P4 283 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 IFI16Q16666 785 aaKnown RBP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 SLF2Q8IX21 1173 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 FAM133BQ5BKY9 247 aaKnown RBP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 RESP18Q5W5W9 173 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 BAG3O95817 575 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 PARP1P09874 1014 aaKnown RBP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 ADAT2Q7Z6V5 191 aaKnown RBP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 TMEM110-MUSTN1A8MSY1 372 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 TRAF5O00463 557 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 CTDNEP1O95476 244 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 ELF1P32519 619 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 FXR1P51114 621 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 TBC1D1Q86TI0 1168 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-215ENST00000544547 HPCAL4Q9UM19 191 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 MROH1Q8NDA8 1641 aa15.76■□□□□ 0.11
LIMS1-215ENST00000544547 DNM2P50570 870 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 RSRC2Q7L4I2 434 aaKnown RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 PUS7LQ9H0K6 701 aaKnown RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 RBM28Q9NW13 759 aaKnown RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 PPLO60437 1756 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 A0A0G2JLW4 131 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 PTGDRQ13258 359 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 WDR78Q5VTH9 848 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 USP31Q70CQ4 1352 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 TCHHQ07283 1943 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 MEFVO15553 781 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 KIF1CO43896 1103 aaKnown RBP15.75■□□□□ 0.11
LIMS1-215ENST00000544547 RPS6KA1Q15418 735 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 DNAJC10Q8IXB1 793 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 EHD4Q9H223 541 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 ANKZF1Q9H8Y5 726 aa15.75■□□□□ 0.11
LIMS1-215ENST00000544547 SEC24CP53992 1094 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 CCDC26Q8TAB7 109 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 THOC1Q96FV9 657 aaKnown RBP15.74■□□□□ 0.11
LIMS1-215ENST00000544547 GSDMAQ96QA5 445 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 CD2APQ9Y5K6 639 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 OVOS2A0A0J9YW53 1432 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 OVOS2Q6IE36 1432 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 TSPOAP1O95153 1857 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 MYO1EQ12965 1108 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 DYMQ7RTS9 669 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 HNRNPLLQ8WVV9 542 aaKnown RBP15.74■□□□□ 0.11
LIMS1-215ENST00000544547 IFT74Q96LB3 600 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 JAG2Q9Y219 1238 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 REREQ9P2R6 1566 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 H7C1D1 291 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 CETN2P41208 172 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 SLC9C1Q4G0N8 1177 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 NAA35Q5VZE5 725 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 VSIG1Q86XK7 387 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 LMNTD2Q8IXW0 634 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms