RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 PDE6BP35913 854 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 MCF2L2Q86YR7 1114 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 COL17A1Q9UMD9 1497 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 OLFM3Q96PB7 478 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 URB2Q14146 1524 aaKnown RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 AKAP4Q5JQC9 854 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 PAXIP1Q6ZW49 1069 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 PSMB7Q99436 277 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 RAB44Q7Z6P3 723 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 XAGE3Q8WTP9 111 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 RIOK1Q9BRS2 568 aaKnown RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 CUEDC2Q9H467 287 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 METTL14Q9HCE5 456 aaKnown RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 MYL1P05976 194 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 PUM3Q15397 648 aaKnown RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 GRAMD4Q6IC98 578 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 LRRC43Q8N309 656 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 HERC4Q5GLZ8 1057 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-215ENST00000543185 ATP6V1E1P36543 226 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 PIK3AP1Q6ZUJ8 805 aa21.15■□□□□ 0.98
HDAC4-215ENST00000543185 C6orf118Q5T5N4 469 aa21.14■□□□□ 0.98
HDAC4-215ENST00000543185 HACE1Q8IYU2 909 aa21.14■□□□□ 0.98
HDAC4-215ENST00000543185 ARHGEF9O43307 516 aa21.14■□□□□ 0.98
HDAC4-215ENST00000543185 POTEB3A0JP26 581 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 POTEBQ6S5H4 581 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 FAM207AQ9NSI2 230 aaPredicted RBP21.14■□□□□ 0.97
HDAC4-215ENST00000543185 ZFXP17010 805 aaPredicted RBP21.14■□□□□ 0.97
HDAC4-215ENST00000543185 EEF1GP26641 437 aaKnown RBP21.14■□□□□ 0.97
HDAC4-215ENST00000543185 STX1BP61266 288 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 PCDHB13Q9Y5F0 798 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 NR1H3Q13133 447 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 CCDC138Q96M89 665 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 TAB2Q9NYJ8 693 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 SGSM2O43147 1006 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 HOXB7P09629 217 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 SLFN12Q8IYM2 578 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 UPF3AQ9H1J1 476 aaKnown RBP21.14■□□□□ 0.97
HDAC4-215ENST00000543185 ARHGAP18Q8N392 663 aa21.14■□□□□ 0.97
HDAC4-215ENST00000543185 LAD1O00515 517 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 KAT6AQ92794 2004 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 POLR2BP30876 1174 aaKnown RBP21.13■□□□□ 0.97
HDAC4-215ENST00000543185 PPP1R13BQ96KQ4 1090 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 PHF8Q9UPP1 1060 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 DAAM1Q9Y4D1 1078 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 SIRT1Q96EB6 747 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 TMEM232C9JQI7 657 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 IPO5O00410 1097 aaKnown RBP21.13■□□□□ 0.97
HDAC4-215ENST00000543185 GFAPP14136 432 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 EMBQ6PCB8 327 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 SYNMO15061 1565 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 RAP1GDS1P52306 607 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 TAF11Q15544 211 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 C17orf53Q8N3J3 647 aaPredicted RBP21.13■□□□□ 0.97
HDAC4-215ENST00000543185 MYCT1Q8N699 235 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 C1orf112Q9NSG2 853 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 NPC1L1Q9UHC9 1359 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 SHANK2Q9UPX8 1470 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 USP6NLQ92738 828 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 HOOK2Q96ED9 719 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 SAAL1Q96ER3 474 aa21.13■□□□□ 0.97
HDAC4-215ENST00000543185 NOP14P78316 857 aaKnown RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 AKNAD1Q5T1N1 836 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 LSM14BQ9BX40 385 aaKnown RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 ADKP55263 362 aaKnown RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 CTNND1O60716 968 aaKnown RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 S100BP04271 92 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 BPIFB4P59827 614 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 CHST3Q7LGC8 479 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 POLR3CQ9BUI4 534 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 CD2APQ9Y5K6 639 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 USHBP1Q8N6Y0 703 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 IFNB1P01574 187 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 NSFP46459 744 aaKnown RBP21.12■□□□□ 0.97
HDAC4-215ENST00000543185 TCP11Q8WWU5 503 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 TMCO4Q5TGY1 634 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 TEKT2Q9UIF3 430 aa21.12■□□□□ 0.97
HDAC4-215ENST00000543185 GUCY2DQ02846 1103 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 LMBR1LQ6UX01 489 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 SNX29Q8TEQ0 813 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 NACA2Q9H009 215 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 LRWD1Q9UFC0 647 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 IQSEC3Q9UPP2 1182 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-215ENST00000543185 SHROOM2Q13796 1616 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 CDC37L1Q7L3B6 337 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 MAPK13O15264 365 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 CDR2Q01850 454 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 RUBCNQ92622 972 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 ICE2Q659A1 982 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 ARMCX3Q9UH62 379 aaPredicted RBP21.11■□□□□ 0.97
HDAC4-215ENST00000543185 TMCO5AQ8N6Q1 288 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 APPBP2Q92624 585 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 SH3GL3Q99963 347 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 PNMA2Q9UL42 364 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 CLASP1Q7Z460 1538 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 FAM83GA6ND36 823 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 CEP19Q96LK0 163 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 FAM96AQ9H5X1 160 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 IFT122Q9HBG6 1241 aa21.11■□□□□ 0.97
HDAC4-215ENST00000543185 SERPINB10P48595 397 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms