RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 VAMP4O75379 141 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 GH2P01242 217 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 PGK2P07205 417 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 HOXB1P14653 301 aaPredicted RBP5.89□□□□□ -1.47
LIMS1-214ENST00000542845 ERCC3P19447 782 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 CLCN1P35523 988 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 TIMM10P62072 90 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 GSTO1P78417 241 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 EXOSC9Q06265 439 aaKnown RBP5.89□□□□□ -1.47
LIMS1-214ENST00000542845 CCDC102BQ68D86 513 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 TBC1D9Q6ZT07 1266 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 ANKRD33Q7Z3H0 272 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 FOXP4Q8IVH2 680 aaPredicted RBP5.89□□□□□ -1.47
LIMS1-214ENST00000542845 TGFBRAP1Q8WUH2 860 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 MAML3Q96JK9 1138 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 GLT1D1Q96MS3 346 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 TOX2Q96NM4 488 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 MOV10L1Q9BXT6 1211 aaKnown RBP5.89□□□□□ -1.47
LIMS1-214ENST00000542845 CDHR5Q9HBB8 845 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 TBX21Q9UL17 535 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF521Q96K83 1311 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 NCOR1O75376 2440 aa5.89□□□□□ -1.47
LIMS1-214ENST00000542845 REV3LO60673 3130 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 EPOPA6NHQ4 379 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 CA3P07451 260 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 C6orf222P0C671 652 aaPredicted RBP5.88□□□□□ -1.47
LIMS1-214ENST00000542845 MS4A1P11836 297 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 FCER1AP12319 257 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 ALADP13716 330 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 ATP2A2P16615 1042 aaKnown RBP5.88□□□□□ -1.47
LIMS1-214ENST00000542845 VCAM1P19320 739 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 USP14P54578 494 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 RASGRF1Q13972 1273 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 RABL6Q3YEC7 729 aaPredicted RBP5.88□□□□□ -1.47
LIMS1-214ENST00000542845 TMEM67Q5HYA8 995 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 ATG9AQ7Z3C6 839 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 ACER1Q8TDN7 264 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF384Q8TF68 577 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 NEUROD6Q96NK8 337 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 TANGO6Q9C0B7 1094 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 SPATC1LQ9H0A9 340 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 DHX36Q9H2U1 1008 aaKnown RBP5.88□□□□□ -1.47
LIMS1-214ENST00000542845 DNAJC18Q9H819 358 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 AATFQ9NY61 560 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMS1-214ENST00000542845 PCDHA11Q9Y5I1 949 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 MROH7Q68CQ1 1323 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 XIRP2A4UGR9 3374 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 A0A0G2JMZ2 1700 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 SIPA1L1O43166 1804 aa5.88□□□□□ -1.47
LIMS1-214ENST00000542845 PRRC2BQ5JSZ5 2229 aaKnown RBP5.87□□□□□ -1.47
LIMS1-214ENST00000542845 MYADML2A6NDP7 307 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 ARVCFO00192 962 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 IGHA2P01877 340 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 HLA-DOAP06340 250 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 ASGR1P07306 291 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 AKR1A1P14550 325 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 SLC4A3P48751 1232 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 COG2Q14746 738 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 GORABQ5T7V8 394 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 TMEM92Q6UXU6 159 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 EP400NLQ6ZTU2 488 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 DEFB128Q7Z7B8 93 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 WWC1Q8IX03 1113 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 FAM178BQ8IXR5 827 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 CLUAP1Q96AJ1 413 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 NSUN4Q96CB9 384 aaKnown RBP5.87□□□□□ -1.47
LIMS1-214ENST00000542845 SCLYQ96I15 445 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 MMP19Q99542 508 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 TINF2Q9BSI4 451 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 TSEN34Q9BSV6 310 aaKnown RBP5.87□□□□□ -1.47
LIMS1-214ENST00000542845 HIPK3Q9H422 1215 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 GPCPD1Q9NPB8 672 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 HOXC10Q9NYD6 342 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 LRP2BPQ9P2M1 347 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 ZHX1Q9UKY1 873 aaPredicted RBP5.87□□□□□ -1.47
LIMS1-214ENST00000542845 FAM184BQ9ULE4 1060 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 CNPY2Q9Y2B0 182 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 UMODL1Q5DID0 1318 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 SYNRGQ9UMZ2 1314 aa5.87□□□□□ -1.47
LIMS1-214ENST00000542845 FANCIQ9NVI1 1328 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 A0A0U1RQG5 324 aaPredicted RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 MOXD2PA6NHM9 499 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 MPHOSPH10O00566 681 aaKnown RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 RAD21O60216 631 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 ADAMTS4O75173 837 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 BAG3O95817 575 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF865P0CJ78 1059 aaPredicted RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 IL9P15248 144 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 KCNA5P22460 613 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 RFX5P48382 616 aaPredicted RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 CDK7P50613 346 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 FOXK2Q01167 660 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 GRB10Q13322 594 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 ABCB5Q2M3G0 1257 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 CERKLQ49MI3 558 aaPredicted RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 GNASQ5JWF2 1037 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 PI16Q6UXB8 463 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 LBX2Q6XYB7 198 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 HFE2Q6ZVN8 426 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 RPUSD2Q8IZ73 545 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms