RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ADGRF4Q8IZF3 695 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 KANSL2Q9H9L4 492 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 JMJD4Q9H9V9 463 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 SH3GLB2Q9NR46 395 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 PCDHA6Q9UN73 950 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 PCDHA4Q9UN74 947 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 PCDHA8Q9Y5H6 950 aa14.08□□□□□ -0.15
AP003559.1-201ENST00000540906 USP17L10C9JJH3 530 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 YBX3P16989 372 aaKnown RBP eCLIP14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 CMA1P23946 247 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 ECE1P42892 770 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 FKBP1CQ5VVH2 108 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 SLFN13Q68D06 897 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 CCDC84Q86UT8 332 aaPredicted RBP14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 ACER1Q8TDN7 264 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 COA7Q96BR5 231 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 RRP36Q96EU6 259 aaKnown RBP14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 TEPSINQ96N21 525 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 CNOT7Q9UIV1 285 aaKnown RBP14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 HPSEQ9Y251 543 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 SBF1O95248 1867 aa14.08□□□□□ -0.16
AP003559.1-201ENST00000540906 RAD21O60216 631 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 LETM1O95202 739 aaPredicted RBP14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 PTPREP23469 700 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 SMARCA1P28370 1054 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 GPR162Q16538 588 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 TTC38Q5R3I4 469 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 RESP18Q5W5W9 173 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 USP49Q70CQ1 688 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 FAM83AQ86UY5 434 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 DAGLBQ8NCG7 672 aa14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 DICER1Q9UPY3 1922 aaKnown RBP14.07□□□□□ -0.16
AP003559.1-201ENST00000540906 TRIM75PA6NK02 468 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 CUTAO60888 179 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 NDUFB10O96000 172 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 TAL1P17542 331 aaPredicted RBP14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 NAPAP54920 295 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 SNAP25P60880 206 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 TYRO3Q06418 890 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 RASA3Q14644 834 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 ARHGAP27Q6ZUM4 889 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 BRMS1Q9HCU9 246 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 HERC5Q9UII4 1024 aaKnown RBP14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 FAM237AA0A1B0GTK4 181 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 F5H6K3 240 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 RPS12P25398 132 aaKnown RBP14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 KLRC3Q07444 240 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 KRI1Q8N9T8 703 aaKnown RBP14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 TRPM4Q8TD43 1214 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 MTMR8Q96EF0 704 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 GLIS2Q9BZE0 524 aaPredicted RBP14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 ZMYND12Q9H0C1 365 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 TMEM260Q9NX78 707 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 ZBTB21Q9ULJ3 1066 aa14.06□□□□□ -0.16
AP003559.1-201ENST00000540906 SMCO2A6NFE2 343 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 ZNF202O95125 648 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 CALML3P27482 149 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 IL17AQ16552 155 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 CSRNP2Q9H175 543 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 ATAD5Q96QE3 1844 aa14.05□□□□□ -0.16
AP003559.1-201ENST00000540906 MYO1BO43795 1136 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 KINO60870 393 aaKnown RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 SLC1A4P43007 532 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 INF2Q27J81 1249 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 KIF4BQ2VIQ3 1234 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 SPICE1Q8N0Z3 855 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 C4orf32Q8N8J7 132 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 GMCL1P1Q8NEA9 526 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 CCDC148Q8NFR7 591 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 DCAF4Q8WV16 495 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 DPF2Q92785 391 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 SEC63Q9UGP8 760 aaKnown RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 HACL1Q9UJ83 578 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 SRPRBQ9Y5M8 271 aaKnown RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 A0A087X0B3 334 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 PHF20L1A8MW92 1017 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 EDIL3O43854 480 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 TBC1D12O60347 775 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 MCM7P33993 719 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 MAP3K10Q02779 954 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 PTGDRQ13258 359 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 GPATCH4Q5T3I0 446 aaKnown RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 JMYQ8N9B5 988 aa14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 BIN2Q9UBW5 565 aaPredicted RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 NOL7Q9UMY1 257 aaKnown RBP14.04□□□□□ -0.16
AP003559.1-201ENST00000540906 PNMA6FA0A0J9YX94 578 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 FOXN1O15353 648 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 SYKP43405 635 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 QRICH1Q2TAL8 776 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 LONRF3Q496Y0 759 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 PRAMEF18Q5VWM3 479 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 JAKMIP3Q5VZ66 844 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 TMEM60Q9H2L4 133 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 FZD1Q9UP38 647 aa14.03□□□□□ -0.16
AP003559.1-201ENST00000540906 AP5Z1O43299 807 aa14.02□□□□□ -0.16
AP003559.1-201ENST00000540906 CCDC192P0DO97 292 aa14.02□□□□□ -0.16
AP003559.1-201ENST00000540906 CAP2P40123 477 aa14.02□□□□□ -0.16
AP003559.1-201ENST00000540906 HIRAP54198 1017 aaPredicted RBP14.02□□□□□ -0.16
AP003559.1-201ENST00000540906 ATP2C1P98194 919 aaPredicted RBP14.02□□□□□ -0.16
AP003559.1-201ENST00000540906 ANO6Q4KMQ2 910 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms