RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ADAMTS4O75173 837 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 PGK1P00558 417 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 CLTBP09497 229 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 TAL1P17542 331 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 SMAD3P84022 425 aaKnown RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 C9orf50Q5SZB4 431 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 C20orf194Q5TEA3 1177 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 SH3RF1Q7Z6J0 888 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 ZNF444Q8N0Y2 327 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 TRIM43Q96BQ3 446 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 DDX11Q96FC9 970 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 NUP88Q99567 741 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 EPB41L4AQ9HCS5 686 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 FAM184BQ9ULE4 1060 aa14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 GREB1LQ9C091 1923 aaPredicted RBP14.34□□□□□ -0.11
CBX3P4-202ENST00000540428 MYH7P12883 1935 aa14.33□□□□□ -0.11
CBX3P4-202ENST00000540428 A0A1W2PQ45 241 aaPredicted RBP14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 A0A1W2PQY0 241 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 MOXD2PA6NHM9 499 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 KIAA0355O15063 1070 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 SNAI1O95863 264 aaPredicted RBP14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 TDO2P48775 406 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 OAZ1P54368 228 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 TOX2Q96NM4 488 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 SLC38A10Q9HBR0 1119 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 CLIP2Q9UDT6 1046 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 FBXO40Q9UH90 709 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 FEM1BQ9UK73 627 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 RIPK3Q9Y572 518 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 DNAH12Q6ZR08 3092 aa14.33□□□□□ -0.12
CBX3P4-202ENST00000540428 PATL2C9JE40 543 aaKnown RBP14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 TTLL1O95922 423 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 FDX1P10109 184 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 ANKRD33Q7Z3H0 272 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 GMCL1P1Q8NEA9 526 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 KLHDC9Q8NEP7 349 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 CHST13Q8NET6 341 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 NUP133Q8WUM0 1156 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 NACAP1Q9BZK3 213 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 MTMR4Q9NYA4 1195 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 CTDP1Q9Y5B0 961 aaPredicted RBP14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 TTC41PQ6P2S7 1318 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 PLIN4Q96Q06 1357 aa14.32□□□□□ -0.12
CBX3P4-202ENST00000540428 COL11A1P12107 1806 aaPredicted RBP14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 TMEM265A0A087WTH1 108 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 DUSP11O75319 330 aaKnown RBP14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 APPP05067 770 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 RAG1P15918 1043 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 ITGB8P26012 769 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 CST5P28325 142 aaPredicted RBP14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 ACLYP53396 1101 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 CCSAPQ6IQ19 270 aaPredicted RBP14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 IFNL3Q8IZI9 196 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 CPXCR1Q8N123 301 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 STK11IPQ8N1F8 1099 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 NEDD1Q8NHV4 660 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 CEP95Q96GE4 821 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 SEMA6BQ9H3T3 888 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 STARD7Q9NQZ5 370 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 SYNRGQ9UMZ2 1314 aa14.31□□□□□ -0.12
CBX3P4-202ENST00000540428 DCDC2CA8MYV0 355 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 M0R2C6 588 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 ERC2O15083 957 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 PQBP1O60828 265 aaKnown RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 PRDM1O75626 825 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 SLC3A2P08195 630 aaKnown RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 PDE4BQ07343 736 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 PPP4R3BQ5MIZ7 849 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 TSHZ3Q63HK5 1081 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 ANKRD35Q8N283 1001 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 KIFC2Q96AC6 838 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 LENG1Q96BZ8 264 aaPredicted RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 FAM161BQ96MY7 647 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 ABHD16BQ9H3Z7 469 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 RAVER2Q9HCJ3 691 aaKnown RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 TMEM39AQ9NV64 488 aa14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 ZHX1Q9UKY1 873 aaPredicted RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 ZNFX1Q9P2E3 1918 aaKnown RBP14.3□□□□□ -0.12
CBX3P4-202ENST00000540428 TSPY3P0CV98 308 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 TSPY8P0CW00 308 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 BMP3P12645 472 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 FPGSQ05932 587 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 FAAP100Q0VG06 881 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 ACVR2BQ13705 512 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 KCNA10Q16322 511 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 SLFN13Q68D06 897 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 PCSK9Q8NBP7 692 aaKnown RBP14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 RNPC3Q96LT9 517 aaKnown RBP14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 GLT1D1Q96MS3 346 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 CDX2Q99626 313 aaPredicted RBP14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 SPC25Q9HBM1 224 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 ELP1O95163 1332 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 MROH7Q68CQ1 1323 aa14.29□□□□□ -0.12
CBX3P4-202ENST00000540428 SMCHD1A6NHR9 2005 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 SLC4A3P48751 1232 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 GJA9P57773 515 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 FAM160B2Q86V87 743 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 LRRC47Q8N1G4 583 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms