RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 GOLGA6L19H0YKK7 550 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 STXBP3O00186 592 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 CAPN2P17655 700 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 MSNP26038 577 aaKnown RBP11□□□□□ -0.65
CLIP1-212ENST00000540304 GRIN1Q05586 938 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 NOM1Q5C9Z4 860 aaKnown RBP11□□□□□ -0.65
CLIP1-212ENST00000540304 USP17L2Q6R6M4 530 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 KRBA2Q6ZNG9 492 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 HEATR3Q7Z4Q2 680 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 ELOA2Q8IYF1 753 aaPredicted RBP11□□□□□ -0.65
CLIP1-212ENST00000540304 DAGLBQ8NCG7 672 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 FERMT2Q96AC1 680 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 PCDHAC2Q9Y5I4 1007 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 TTLL1O95922 423 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 PDHBP11177 359 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 NBPF20Q3BBV1 942 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 SPECC1Q5M775 1068 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 CNNM3Q8NE01 707 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 MYH4Q9Y623 1939 aa11□□□□□ -0.65
CLIP1-212ENST00000540304 SRCAPQ6ZRS2 3230 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 YDJCA8MPS7 323 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 WNT7AO00755 349 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 DYNC1I1O14576 645 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 NLRP12P59046 1061 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ZNF174Q15697 407 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 LONRF3Q496Y0 759 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ASPRV1Q53RT3 343 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 CT47A1Q5JQC4 288 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 TYW1BQ6NUM6 668 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ZFPM1Q8IX07 1006 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 CCDC12Q8WUD4 166 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 RRP36Q96EU6 259 aaKnown RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 CCDC17Q96LX7 622 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 CSRNP2Q9H175 543 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 FAM198AQ9UFP1 575 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 HOOK1Q9UJC3 728 aaKnown RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 TUBE1Q9UJT0 475 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ZKSCAN5Q9Y2L8 839 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 USP17L5A8MUK1 530 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 BECN2A8MW95 431 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 M0R2N6 131 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ADAMTS3O15072 1205 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 CACNB3P54284 484 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 ATP2C1P98194 919 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 TCP10Q12799 353 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 DPCR1Q3MIW9 517 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 DHX40Q8IX18 779 aaKnown RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 LRRC47Q8N1G4 583 aaKnown RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 BPIFA3Q9BQP9 254 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 PI4KBQ9UBF8 816 aa10.99□□□□□ -0.65
CLIP1-212ENST00000540304 SEC63Q9UGP8 760 aaKnown RBP10.99□□□□□ -0.65
CLIP1-212ENST00000540304 SLURP2P0DP57 97 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 SNHG28P0DPA3 235 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 DPEP1P16444 411 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 METTL16Q86W50 562 aaKnown RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 CPVLQ9H3G5 476 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 CLIP2Q9UDT6 1046 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 CCDC194A0A1B0GVG4 234 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 DDTLA6NHG4 134 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 BIN1O00499 593 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 MPHOSPH10O00566 681 aaKnown RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 POLR2DO15514 142 aaKnown RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 KCNA3P22001 575 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 EIF6P56537 245 aaKnown RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 PTGDRQ13258 359 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 PNOCQ13519 176 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 SARM1Q6SZW1 724 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 CLEC10AQ8IUN9 316 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 ZSCAN29Q8IWY8 852 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 RIOX1Q9H6W3 641 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 DNAJC18Q9H819 358 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.98□□□□□ -0.65
CLIP1-212ENST00000540304 PCDHA6Q9UN73 950 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 PCDHA8Q9Y5H6 950 aa10.98□□□□□ -0.65
CLIP1-212ENST00000540304 COL2A1P02458 1487 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 FRMPD2Q68DX3 1309 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 hCG_1984214I3L0E3 225 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 NAPAP54920 295 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 CFAP100Q494V2 611 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 PLA2G4DQ86XP0 818 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 HOMER1Q86YM7 354 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ZNF713Q8N859 430 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 TRIM5Q9C035 493 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ZMYND12Q9H0C1 365 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ATRNL1Q5VV63 1379 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 GOLGA6L6A8MZA4 724 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ZNF500O60304 480 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ENTPD3O75355 529 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 MCM7P33993 719 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ZNF75DP51815 510 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ISM2Q6H9L7 571 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 KANK3Q6NY19 840 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 RSBN1LQ6PCB5 846 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 SH3BP5LQ7L8J4 393 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 AOPEPQ8N6M6 819 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 GPATCH11Q8N954 259 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 SPC24Q8NBT2 197 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 RASGRP4Q8TDF6 673 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 PIGSQ96S52 555 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms