RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 AGXT2Q9BYV1 514 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 RANBP17Q9H2T7 1088 aaKnown RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 VCXQ9H320 206 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 L3MBTL1Q9Y468 752 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 FAM208AQ9UK61 1670 aaKnown RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 DPPA5A6NC42 116 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 ENC1O14682 589 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 ABL2P42684 1182 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 NCAPD2Q15021 1401 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 DHX32Q7L7V1 743 aaKnown RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 WHAMMQ8TF30 809 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 NOC3LQ8WTT2 800 aaKnown RBP13.79□□□□□ -0.2
USP3-203ENST00000538686 CPLX3Q8WVH0 158 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 MAIP1Q8WWC4 291 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 C8orf76Q96K31 380 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 MAN1B1Q9UKM7 699 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 TMCO1Q9UM00 188 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 PHF8Q9UPP1 1060 aa13.79□□□□□ -0.2
USP3-203ENST00000538686 CRB1P82279 1406 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 TAF5LO75529 589 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 WFS1O76024 890 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 DESP17661 470 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 GNAQP50148 359 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 FMR1Q06787 632 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP3-203ENST00000538686 MYBPC3Q14896 1274 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 CDC37Q16543 378 aaPredicted RBP13.78□□□□□ -0.2
USP3-203ENST00000538686 CCDC122Q5T0U0 273 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 SPATA1Q5VX52 437 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 TMEM132EQ6IEE7 984 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 RUFY4Q6ZNE9 571 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 CPLX4Q7Z7G2 160 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 FAM114A1Q8IWE2 563 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 CCDC155Q8N6L0 562 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 SMCR8Q8TEV9 937 aaPredicted RBP13.78□□□□□ -0.2
USP3-203ENST00000538686 TMBIM4Q9HC24 238 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 ATXN10Q9UBB4 475 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 SLC12A6Q9UHW9 1150 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 TEX33O43247 280 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 SRGAP2O75044 1071 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 GSTA2P09210 222 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 NLRP5P59047 1200 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 ZBED6P86452 979 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 GUCY1B3Q02153 619 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 BYSLQ13895 437 aaKnown RBP13.78□□□□□ -0.2
USP3-203ENST00000538686 MORC3Q14149 939 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 ENOX2Q16206 610 aaKnown RBP13.78□□□□□ -0.2
USP3-203ENST00000538686 KANK3Q6NY19 840 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 APTXQ7Z2E3 356 aaKnown RBP13.78□□□□□ -0.2
USP3-203ENST00000538686 OPTNQ96CV9 577 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 KCNMB3Q9NPA1 279 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP3-203ENST00000538686 EMILIN1Q9Y6C2 1016 aa13.78□□□□□ -0.2
USP3-203ENST00000538686 RFX7Q2KHR2 1363 aa13.77□□□□□ -0.2
USP3-203ENST00000538686 A0A0D9SFI3 127 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 GCOM1H8Y6P7 765 aaPredicted RBP13.77□□□□□ -0.21
USP3-203ENST00000538686 ABL1P00519 1130 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 MYZAPP0CAP1 466 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 BMP6P22004 513 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 CDC27P30260 824 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 FXR1P51114 621 aaKnown RBP eCLIP13.77□□□□□ -0.21
USP3-203ENST00000538686 ATP11AP98196 1134 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 HSP90AA4PQ58FG1 418 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 HDGFL1Q5TGJ6 251 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 LRRC1Q9BTT6 524 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 DMAP1Q9NPF5 467 aaPredicted RBP13.77□□□□□ -0.21
USP3-203ENST00000538686 SAMSN1Q9NSI8 373 aaKnown RBP13.77□□□□□ -0.21
USP3-203ENST00000538686 ZFYVE16Q7Z3T8 1539 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 ABCC12Q96J65 1359 aa13.77□□□□□ -0.21
USP3-203ENST00000538686 RBM47A0AV96 593 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 PDE2AO00408 941 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 ORC4O43929 436 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 NQO1P15559 274 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 PDE6BP35913 854 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 ZNF131P52739 623 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 LACTBP83111 547 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 POSTNQ15063 836 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 RNF168Q8IYW5 571 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 SPATA4Q8NEY3 305 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 SEC62Q99442 399 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 FSD1Q9BTV5 496 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 CNOT10Q9H9A5 744 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 JADE2Q9NQC1 790 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 DMGDHQ9UI17 866 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 LRRC42Q9Y546 428 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 TAF6LQ9Y6J9 622 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 EVI5O60447 810 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 ATP2C2O75185 946 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 IDEP14735 1019 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 TCP1P17987 556 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 SARSP49591 514 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 MDM2Q00987 491 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 RRS1Q15050 365 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 QPCTQ16769 361 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 TSR1Q2NL82 804 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 AGBL2Q5U5Z8 902 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 C8orf74Q6P047 294 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 SHC4Q6S5L8 630 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 DNAJC14Q6Y2X3 702 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 EIF1ADQ8N9N8 165 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms