RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	NBPF3	Q9H094	633 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	ARHGEF10L	Q9HCE6	1279 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.09	□□□□□ -0.79	1e-323	■■■□□ 16.4
SNHG1-209	ENST00000538654	MAGEC2	Q9UBF1	373 aa	Predicted RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	TMCO5B	A8MYB1	307 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	EYA2	O00167	538 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	MEFV	O15553	781 aa	Predicted RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	C21orf2	O43822	256 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	ABL1	P00519	1130 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	TOB1	P50616	345 aa	Predicted RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	CASP7	P55210	303 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	NEDD9	Q14511	834 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	PLCB4	Q15147	1175 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	KRT31	Q15323	416 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	CCDC122	Q5T0U0	273 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	SGMS1	Q86VZ5	419 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	MICU3	Q86XE3	530 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	DDX27	Q96GQ7	796 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	EID1	Q9Y6B2	187 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	MRPL42	Q9Y6G3	142 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	PPP1R3G	B7ZBB8	358 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	IPO7	O95373	1038 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	ATP1A1	P05023	1023 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	GPT	P24298	496 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	COPB1	P53618	953 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	STX17	P56962	302 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	APBA1	Q02410	837 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	EMB	Q6PCB8	327 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	SH3RF1	Q7Z6J0	888 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	DIS3L2	Q8IYB7	885 aa	Known RBP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	MMGT1	Q8N4V1	131 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	SLC26A6	Q9BXS9	759 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	STRN4	Q9NRL3	753 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	GGA2	Q9UJY4	613 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	TBX22	Q9Y458	520 aa		10.09	□□□□□ -0.79
SNHG1-209	ENST00000538654	HSF2BP	O75031	334 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	BMP15	O95972	392 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	CD44	P16070	742 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	IFNAR1	P17181	557 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	CCT6A	P40227	531 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	FOXO4	P98177	505 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	KIAA1328	Q86T90	577 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	XAGE2	Q96GT9	111 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	PAGE5	Q96GU1	130 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	PYM1	Q9BRP8	204 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	LRRC27	Q9C0I9	530 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	RWDD2A	Q9UIY3	292 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	BCL9L	Q86UU0	1499 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	TLDC2	A0PJX2	215 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	BTBD18	B2RXH4	712 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	ENC1	O14682	589 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	GPR37	O15354	613 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	GPAA1	O43292	621 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	RANBP6	O60518	1105 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	CYLC1	P35663	651 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	LIFR	P42702	1097 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	SERPINB4	P48594	390 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	FNTA	P49354	379 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	EPHB4	P54760	987 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	DPYD	Q12882	1025 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	TTF1	Q15361	905 aa	Predicted RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	CSRNP2	Q9H175	543 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	HDAC6	Q9UBN7	1215 aa		10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	LUC7L2	Q9Y383	392 aa	Known RBP	10.08	□□□□□ -0.8
SNHG1-209	ENST00000538654	NID2	Q14112	1375 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654		H7C1W4	665 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	GRIN1	Q05586	938 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	DRP2	Q13474	957 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TCP11X2	Q5H9J9	407 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	PLBD2	Q8NHP8	589 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	FERMT2	Q96AC1	680 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CAPZA3	Q96KX2	299 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	DNAJC7	Q99615	494 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	JPH2	Q9BR39	696 aa	Predicted RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TSGA10	Q9BZW7	698 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CEP126	Q9P2H0	1117 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CTNND2	Q9UQB3	1225 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	REXO2	Q9Y3B8	237 aa	Known RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	SLC12A7	Q9Y666	1083 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654		A0A1W2PQC6	194 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	DYTN	A2CJ06	578 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CFAP69	A5D8W1	941 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TTC36	A6NLP5	189 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	SRRM3	A6NNA2	597 aa	Predicted RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	LTK	P29376	864 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TDO2	P48775	406 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	NNT	Q13423	1086 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TMEM67	Q5HYA8	995 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CYB5R4	Q7L1T6	521 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CCDC50	Q8IVM0	306 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	LRRC59	Q96AG4	307 aa	Known RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	GDAP1L1	Q96MZ0	367 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	SEC31B	Q9NQW1	1179 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	TPX2	Q9ULW0	747 aa	Known RBP	10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	LAMB4	A4D0S4	1761 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	CAMTA1	Q9Y6Y1	1673 aa		10.07	□□□□□ -0.8
SNHG1-209	ENST00000538654	KCNJ18	B7U540	433 aa		10.06	□□□□□ -0.8

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