RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PORCNQ9H237 461 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 KANSL2Q9H9L4 492 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 ARHGEF10LQ9HCE6 1279 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 TAOK2Q9UL54 1235 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 PRC1O43663 620 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 JAK2O60674 1132 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 HOXD10P28358 340 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 CAVIN1Q6NZI2 390 aaKnown RBP13.88□□□□□ -0.19
CLIP1-208ENST00000537004 GPRC5AQ8NFJ5 357 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 TANGO6Q9C0B7 1094 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 MORF4L1Q9UBU8 362 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 WDR19Q8NEZ3 1342 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 SPDYE16A6NNV3 312 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-208ENST00000537004 CNMDO75829 334 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 MBD3O95983 291 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 ELNP15502 786 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 RGS19P49795 217 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 ERVK-9P63128 1117 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 ERVK-24P63145 666 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 MTFR1Q15390 333 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 TBC1D10CQ8IV04 446 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 ZNF444Q8N0Y2 327 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-208ENST00000537004 ZNF274Q96GC6 653 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-208ENST00000537004 LLPHQ9BRT6 129 aaKnown RBP13.88□□□□□ -0.19
CLIP1-208ENST00000537004 VCPKMTQ9H867 229 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 GDPD2Q9HCC8 539 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 BTBD7Q9P203 1132 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 CNPY2Q9Y2B0 182 aa13.88□□□□□ -0.19
CLIP1-208ENST00000537004 DNAH12Q6ZR08 3092 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 PDIA3P30101 505 aaKnown RBP13.87□□□□□ -0.19
CLIP1-208ENST00000537004 GRK4P32298 578 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 EVCP57679 992 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 ANTXR2P58335 489 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 TRDNQ13061 729 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 NBPF11Q86T75 865 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 TMEM87AQ8NBN3 555 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 CHMP4CQ96CF2 233 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 CEP95Q96GE4 821 aa13.87□□□□□ -0.19
CLIP1-208ENST00000537004 ISY1Q9ULR0 285 aaKnown RBP13.87□□□□□ -0.19
CLIP1-208ENST00000537004 PRMT2P55345 433 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 TFAP4Q01664 338 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 SMARCC2Q8TAQ2 1214 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 COA7Q96BR5 231 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 NUP88Q99567 741 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 RTN4Q9NQC3 1192 aaKnown RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 GPHNQ9NQX3 736 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 FBXO28Q9NVF7 368 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 CLIP2Q9UDT6 1046 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 NAP1L2Q9ULW6 460 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 DOCK3Q8IZD9 2030 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 IGKV6D-41A0A0C4DH26 115 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 CCT2P78371 535 aaKnown RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 PDE4BQ07343 736 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 NSUN7Q8NE18 718 aaKnown RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 BIN2Q9UBW5 565 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-208ENST00000537004 GJD2Q9UKL4 321 aa13.86□□□□□ -0.19
CLIP1-208ENST00000537004 ADCY3O60266 1144 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 NMT2O60551 498 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 FLOT1O75955 427 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 CTDNEP1O95476 244 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 TSPY3P0CV98 308 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 TSPY8P0CW00 308 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 EN2P19622 333 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 MLLT1Q03111 559 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 COG2Q14746 738 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 ZSCAN23Q3MJ62 389 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 NKX2-3Q8TAU0 364 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 LPAR1Q92633 364 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 DDX11Q96FC9 970 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 SH2D4AQ9H788 454 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 ZNF287Q9HBT7 754 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 NCOA5Q9HCD5 579 aaKnown RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 MTMR4Q9NYA4 1195 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 RABGAP1Q9Y3P9 1069 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 MYH6P13533 1939 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 GADD45BO75293 160 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 DNM1Q05193 864 aaKnown RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 FAM83BQ5T0W9 1011 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 WDR78Q5VTH9 848 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 FERMT3Q86UX7 667 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 GAS2L3Q86XJ1 694 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 LRRC47Q8N1G4 583 aaKnown RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 ATG4CQ96DT6 458 aa13.85□□□□□ -0.19
CLIP1-208ENST00000537004 RBM27Q9P2N5 1060 aaKnown RBP13.85□□□□□ -0.19
CLIP1-208ENST00000537004 NEDD4P46934 1319 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 PTPDC1A2A3K4 754 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 F5H6K3 240 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 SLC3A2P08195 630 aaKnown RBP13.84□□□□□ -0.19
CLIP1-208ENST00000537004 XRCC6P12956 609 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLIP1-208ENST00000537004 MRE11P49959 708 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 HMGN5P82970 282 aaKnown RBP13.84□□□□□ -0.19
CLIP1-208ENST00000537004 KLRC3Q07444 240 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 LBX2Q6XYB7 198 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 FAM184AQ8NB25 1140 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 NEDD1Q8NHV4 660 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 NYAP2Q9P242 653 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 BRPF3Q9ULD4 1205 aa13.84□□□□□ -0.19
CLIP1-208ENST00000537004 KLF18A0A0U1RQI7 1052 aa13.83□□□□□ -0.2
CLIP1-208ENST00000537004 B4E1Z4 1266 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms