RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 GBF1Q92538 1859 aa18.84■□□□□ 0.61
CHMP4A-207ENST00000533523 TAL1P17542 331 aaPredicted RBP18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 COPB2P35606 906 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 STAT3P40763 770 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 TLE2Q04725 743 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 ZSCAN25Q6NSZ9 544 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 CTR9Q6PD62 1173 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 STK11IPQ8N1F8 1099 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 LRRCC1Q9C099 1032 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 PPP4R2Q9NY27 417 aa18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 ARPP21Q9UBL0 812 aaPredicted RBP18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 ZNF214Q9UL59 606 aaPredicted RBP18.83■□□□□ 0.6
CHMP4A-207ENST00000533523 A0A1W2PQ45 241 aaPredicted RBP18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 A0A1W2PQY0 241 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 PQBP1O60828 265 aaKnown RBP18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 CLTBP09497 229 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 FOSL2P15408 326 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 ZNF792Q3KQV3 632 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 NUP88Q99567 741 aaPredicted RBP18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 PUS7LQ9H0K6 701 aaKnown RBP18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 ADAMTS5Q9UNA0 930 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 CNPY2Q9Y2B0 182 aa18.82■□□□□ 0.6
CHMP4A-207ENST00000533523 AKR1A1P14550 325 aa18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 SMAD3P84022 425 aaKnown RBP18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 GRIN2CQ14957 1233 aa18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 C1orf53Q5VUE5 145 aa18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 SNRNP48Q6IEG0 339 aaKnown RBP18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 REPS2Q8NFH8 660 aa18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 RNPC3Q96LT9 517 aaKnown RBP18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 SLF1Q9BQI6 1058 aa18.81■□□□□ 0.6
CHMP4A-207ENST00000533523 SMARCA5O60264 1052 aaPredicted RBP18.8■□□□□ 0.6
CHMP4A-207ENST00000533523 SLC4A3P48751 1232 aa18.8■□□□□ 0.6
CHMP4A-207ENST00000533523 TEX13BQ9BXU2 312 aa18.8■□□□□ 0.6
CHMP4A-207ENST00000533523 DCTPP1Q9H773 170 aa18.8■□□□□ 0.6
CHMP4A-207ENST00000533523 DIS3Q9Y2L1 958 aaKnown RBP18.8■□□□□ 0.6
CHMP4A-207ENST00000533523 SYNRGQ9UMZ2 1314 aa18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 ZNF865P0CJ78 1059 aaPredicted RBP18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 MKNK2Q9HBH9 465 aa18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 ZHX1Q9UKY1 873 aaPredicted RBP18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 CTDP1Q9Y5B0 961 aaPredicted RBP18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 TACC3Q9Y6A5 838 aa18.79■□□□□ 0.6
CHMP4A-207ENST00000533523 RAG1P15918 1043 aa18.78■□□□□ 0.6
CHMP4A-207ENST00000533523 RASA1P20936 1047 aa18.78■□□□□ 0.6
CHMP4A-207ENST00000533523 DDX11Q96FC9 970 aa18.78■□□□□ 0.6
CHMP4A-207ENST00000533523 LRRC37A2A6NM11 1700 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 SYNGAP1Q96PV0 1343 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 MINDY4BA8MYZ0 360 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 ADAMTS4O75173 837 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 NDUFB10O96000 172 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 FPGSQ05932 587 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 STRBPQ96SI9 672 aaKnown RBP18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 STARD7Q9NQZ5 370 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 TMEM39AQ9NV64 488 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 PCDHB15Q9Y5E8 787 aa18.77■□□□□ 0.6
CHMP4A-207ENST00000533523 TNFRSF10AO00220 468 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 KIAA0355O15063 1070 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 TDO2P48775 406 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 ACLYP53396 1101 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 SBK1Q52WX2 424 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 CPXCR1Q8N123 301 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 GPATCH3Q96I76 525 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 NYAP2Q9P242 653 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 FAM184BQ9ULE4 1060 aa18.76■□□□□ 0.59
CHMP4A-207ENST00000533523 TCF20Q9UGU0 1960 aaKnown RBP18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 GSG1L2A8MUP6 293 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 DCDC2CA8MYV0 355 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 F5H6K3 240 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 KLRC3Q07444 240 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 TJAP1Q5JTD0 557 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 TSHZ3Q63HK5 1081 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 B4GALNT3Q6L9W6 998 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 MSL3Q8N5Y2 521 aaKnown RBP18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 NUP133Q8WUM0 1156 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 KIFC2Q96AC6 838 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 CCDC136Q96JN2 1154 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 TSEN34Q9BSV6 310 aaKnown RBP18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 ECHDC1Q9NTX5 307 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 CLIP2Q9UDT6 1046 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 ISY1Q9ULR0 285 aaKnown RBP18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 RIPK3Q9Y572 518 aa18.75■□□□□ 0.59
CHMP4A-207ENST00000533523 MYADML2A6NDP7 307 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 MOXD2PA6NHM9 499 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 ZBED4O75132 1171 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 PRDM1O75626 825 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 LRRC47Q8N1G4 583 aaKnown RBP18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 KBTBD3Q8NAB2 608 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 PRPF38AQ8NAV1 312 aaKnown RBP18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 APPBP2Q92624 585 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 OSBP2Q969R2 916 aa18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 RAVER2Q9HCJ3 691 aaKnown RBP18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 EPB41L4AQ9HCS5 686 aaPredicted RBP18.74■□□□□ 0.59
CHMP4A-207ENST00000533523 GPAA1O43292 621 aa18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 SNAI1O95863 264 aaPredicted RBP18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 C6orf222P0C671 652 aaPredicted RBP18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 FAAP100Q0VG06 881 aa18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 KCNA10Q16322 511 aa18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 GIMAP6Q6P9H5 292 aa18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 ANKRD35Q8N283 1001 aa18.73■□□□□ 0.59
CHMP4A-207ENST00000533523 HOMER2Q9NSB8 354 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms