RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 GBA2Q9HCG7 927 aaPredicted RBP21.36■■□□□ 1.01
SMPD1-208ENST00000533123 MBD3O95983 291 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 SLC16A2P36021 539 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 LDLRAD1Q5T700 205 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 CST9Q5W186 159 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 ZSCAN16Q9H4T2 348 aaPredicted RBP21.35■■□□□ 1.01
SMPD1-208ENST00000533123 AFG3L2Q9Y4W6 797 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 CNTNAP5Q8WYK1 1306 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 MYH15Q9Y2K3 1946 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 PHIPQ8WWQ0 1821 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 BMP3P12645 472 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 BACE1P56817 501 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 VAT1LQ9HCJ6 419 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 TMEM63CQ9P1W3 806 aa21.35■■□□□ 1.01
SMPD1-208ENST00000533123 FAM83BQ5T0W9 1011 aa21.34■■□□□ 1.01
SMPD1-208ENST00000533123 FBXO18Q8NFZ0 1043 aa21.34■■□□□ 1.01
SMPD1-208ENST00000533123 LZTS2Q9BRK4 669 aa21.34■■□□□ 1.01
SMPD1-208ENST00000533123 RNF26Q9BY78 433 aaPredicted RBP21.34■■□□□ 1.01
SMPD1-208ENST00000533123 AKAP17AQ02040 695 aaKnown RBP21.33■■□□□ 1.01
SMPD1-208ENST00000533123 C2orf69Q8N8R5 385 aa21.33■■□□□ 1.01
SMPD1-208ENST00000533123 OTUD5Q96G74 571 aa21.33■■□□□ 1.01
SMPD1-208ENST00000533123 ALG1Q9BT22 464 aa21.33■■□□□ 1.01
SMPD1-208ENST00000533123 EMILIN3Q9NT22 766 aa21.33■■□□□ 1.01
SMPD1-208ENST00000533123 STK36Q9NRP7 1315 aa21.33■■□□□ 1
SMPD1-208ENST00000533123 TMEM232C9JQI7 657 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 PRPF3O43395 683 aaKnown RBP21.32■■□□□ 1
SMPD1-208ENST00000533123 YY1P25490 414 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 HMGCS2P54868 508 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 FKBP1BP68106 108 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 ZSCAN23Q3MJ62 389 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 ERO1BQ86YB8 467 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 FAM43AQ8N2R8 423 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 SPZ1Q9BXG8 430 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 DEXIO95424 95 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 UBE2HP62256 183 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 PKN1Q16512 942 aa21.32■■□□□ 1
SMPD1-208ENST00000533123 FTOQ9C0B1 505 aaKnown RBP eCLIP21.32■■□□□ 1
SMPD1-208ENST00000533123 MYH6P13533 1939 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 SPDYE5A6NIY4 337 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 IRF6O14896 467 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 USP14P54578 494 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 PPATQ06203 517 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 IKQ13123 557 aaPredicted RBP21.31■■□□□ 1
SMPD1-208ENST00000533123 CSPP1Q1MSJ5 1256 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 HOMER1Q86YM7 354 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 ADGRF4Q8IZF3 695 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 LPAR1Q92633 364 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 SLC10A4Q96EP9 437 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 RIOX1Q9H6W3 641 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 SMARCA1P28370 1054 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 GAS2L3Q86XJ1 694 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 OPTNQ96CV9 577 aa21.31■■□□□ 1
SMPD1-208ENST00000533123 C19orf81C9J6K1 198 aa21.3■■□□□ 1
SMPD1-208ENST00000533123 VCAM1P19320 739 aa21.3■■□□□ 1
SMPD1-208ENST00000533123 CEBPZQ03701 1054 aaKnown RBP21.3■■□□□ 1
SMPD1-208ENST00000533123 LEO1Q8WVC0 666 aaPredicted RBP21.3■■□□□ 1
SMPD1-208ENST00000533123 SPATA32Q96LK8 384 aa21.3■■□□□ 1
SMPD1-208ENST00000533123 PIGSQ96S52 555 aa21.3■■□□□ 1
SMPD1-208ENST00000533123 FSD2A1L4K1 749 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 SMC1BQ8NDV3 1235 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 SCAND2PQ9GZW5 306 aaPredicted RBP21.29■■□□□ 1
SMPD1-208ENST00000533123 JMJD4Q9H9V9 463 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 PASKQ96RG2 1323 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 KIF28PB7ZC32 967 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 STAT2P52630 851 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 ZNF784Q8NCA9 323 aaPredicted RBP21.29■■□□□ 1
SMPD1-208ENST00000533123 RBM46Q8TBY0 533 aaKnown RBP21.29■■□□□ 1
SMPD1-208ENST00000533123 WASF1Q92558 559 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 TRPM7Q96QT4 1865 aa21.29■■□□□ 1
SMPD1-208ENST00000533123 ELP1O95163 1332 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 GOLGA6L3A6NEY3 463 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 WDR46O15213 610 aaKnown RBP21.28■■□□□ 1
SMPD1-208ENST00000533123 KRT40Q6A162 431 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 SAMD1Q6SPF0 538 aaPredicted RBP21.28■■□□□ 1
SMPD1-208ENST00000533123 RRP36Q96EU6 259 aaKnown RBP21.28■■□□□ 1
SMPD1-208ENST00000533123 FBXO28Q9NVF7 368 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 UNCXA6NJT0 531 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 TOMM70O94826 608 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 PFKFB3Q16875 520 aaPredicted RBP21.28■■□□□ 1
SMPD1-208ENST00000533123 TMOD4Q9NZQ9 345 aa21.28■■□□□ 1
SMPD1-208ENST00000533123 SCG2P13521 617 aa21.27■■□□□ 1
SMPD1-208ENST00000533123 KIF23Q02241 960 aaPredicted RBP21.27■■□□□ 1
SMPD1-208ENST00000533123 PPIL2Q13356 520 aa21.27■■□□□ 1
SMPD1-208ENST00000533123 BTNL9Q6UXG8 535 aa21.27■■□□□ 1
SMPD1-208ENST00000533123 USP28Q96RU2 1077 aa21.27■■□□□ 1
SMPD1-208ENST00000533123 TANGO6Q9C0B7 1094 aa21.27■■□□□ 1
SMPD1-208ENST00000533123 RPAP3Q9H6T3 665 aaPredicted RBP21.27■■□□□ 1
SMPD1-208ENST00000533123 GJA5P36382 358 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 SNAP25P60880 206 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 SYDE2Q5VT97 1194 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 GPKOWQ92917 476 aaPredicted RBP eCLIP21.27■□□□□ 0.99
SMPD1-208ENST00000533123 KIFC2Q96AC6 838 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 C12orf42Q96LP6 360 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 VPS54Q9P1Q0 977 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 SEC63Q9UGP8 760 aaKnown RBP21.27■□□□□ 0.99
SMPD1-208ENST00000533123 PRR12Q9ULL5 1215 aa21.27■□□□□ 0.99
SMPD1-208ENST00000533123 HUNKP57058 714 aa21.26■□□□□ 0.99
SMPD1-208ENST00000533123 SH3D19Q5HYK7 790 aa21.26■□□□□ 0.99
SMPD1-208ENST00000533123 CHURC1Q8WUH1 139 aa21.26■□□□□ 0.99
SMPD1-208ENST00000533123 SHISA4Q96DD7 197 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms