RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PHF24Q9UPV7 400 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 STXBP5LQ9Y2K9 1186 aa13.55□□□□□ -0.24
VPS28-214ENST00000531032 DNAJC25-GNG10A0A024R161 153 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 ERC2O15083 957 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 PRDM1O75626 825 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 APPP05067 770 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 AKR1A1P14550 325 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.54□□□□□ -0.24
VPS28-214ENST00000531032 ZNF444Q8N0Y2 327 aaPredicted RBP13.54□□□□□ -0.24
VPS28-214ENST00000531032 GMCL1P1Q8NEA9 526 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 PDLIM7Q9NR12 457 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 CNPY2Q9Y2B0 182 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 RIPK3Q9Y572 518 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 PCDHB15Q9Y5E8 787 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 SYNGAP1Q96PV0 1343 aa13.54□□□□□ -0.24
VPS28-214ENST00000531032 POTEB2H3BUK9 544 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 TTLL1O95922 423 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 PGK1P00558 417 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 FAM109BQ6ICB4 259 aaPredicted RBP13.53□□□□□ -0.24
VPS28-214ENST00000531032 MAMDC4Q6UXC1 1216 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 RNF180Q86T96 592 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 OTUD7AQ8TE49 926 aaPredicted RBP13.53□□□□□ -0.24
VPS28-214ENST00000531032 FERMT2Q96AC1 680 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 SEC62Q99442 399 aaKnown RBP13.53□□□□□ -0.24
VPS28-214ENST00000531032 NACAP1Q9BZK3 213 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 SLC38A10Q9HBR0 1119 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 PRDM5Q9NQX1 630 aaPredicted RBP13.53□□□□□ -0.24
VPS28-214ENST00000531032 FEM1BQ9UK73 627 aa13.53□□□□□ -0.24
VPS28-214ENST00000531032 ZBED4O75132 1171 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 ADAMTS4O75173 837 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 SNAI1O95863 264 aaPredicted RBP13.52□□□□□ -0.25
VPS28-214ENST00000531032 OAZ1P54368 228 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 PDE4BQ07343 736 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 ZMYM1Q5SVZ6 1142 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 SH3RF1Q7Z6J0 888 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 ZNF467Q7Z7K2 595 aaPredicted RBP13.52□□□□□ -0.25
VPS28-214ENST00000531032 LRRC47Q8N1G4 583 aaKnown RBP13.52□□□□□ -0.25
VPS28-214ENST00000531032 NEDD1Q8NHV4 660 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 LENG1Q96BZ8 264 aaPredicted RBP13.52□□□□□ -0.25
VPS28-214ENST00000531032 DDX11Q96FC9 970 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 FSD1Q9BTV5 496 aa13.52□□□□□ -0.25
VPS28-214ENST00000531032 SALL3Q9BXA9 1300 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 SYNRGQ9UMZ2 1314 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 A0A1W2PQ45 241 aaPredicted RBP13.51□□□□□ -0.25
VPS28-214ENST00000531032 A0A1W2PQY0 241 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TRIM43BA6NCK2 446 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TSPY3P0CV98 308 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TSPY8P0CW00 308 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 MX1P20591 662 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TLE2Q04725 743 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 PPARAQ07869 468 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 CPXCR1Q8N123 301 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 BADQ92934 168 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 KIFC2Q96AC6 838 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TRIM43Q96BQ3 446 aaPredicted RBP13.51□□□□□ -0.25
VPS28-214ENST00000531032 FGD4Q96M96 766 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 TSEN34Q9BSV6 310 aaKnown RBP13.51□□□□□ -0.25
VPS28-214ENST00000531032 NAPBQ9H115 298 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 RAVER2Q9HCJ3 691 aaKnown RBP13.51□□□□□ -0.25
VPS28-214ENST00000531032 FBXO40Q9UH90 709 aa13.51□□□□□ -0.25
VPS28-214ENST00000531032 A0A0C4DFX4 3053 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 FOXP2O15409 715 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 SLC3A2P08195 630 aaKnown RBP13.5□□□□□ -0.25
VPS28-214ENST00000531032 CLTBP09497 229 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 FDX1P10109 184 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 BMP3P12645 472 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 TFAP4Q01664 338 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 SHHQ15465 462 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 C9orf50Q5SZB4 431 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 SLFN13Q68D06 897 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 KLHDC9Q8NEP7 349 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 CHST13Q8NET6 341 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 FAM184BQ9ULE4 1060 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 CTDP1Q9Y5B0 961 aaPredicted RBP13.5□□□□□ -0.25
VPS28-214ENST00000531032 TACC3Q9Y6A5 838 aa13.5□□□□□ -0.25
VPS28-214ENST00000531032 MCM3APO60318 1980 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 MOXD2PA6NHM9 499 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 DUSP11O75319 330 aaKnown RBP13.49□□□□□ -0.25
VPS28-214ENST00000531032 ITGB8P26012 769 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 SLC4A3P48751 1232 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 STAT2P52630 851 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 ACLYP53396 1101 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 CCSAPQ6IQ19 270 aaPredicted RBP13.49□□□□□ -0.25
VPS28-214ENST00000531032 ANKRD33Q7Z3H0 272 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 ANKRD35Q8N283 1001 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 GMCL1Q96IK5 515 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 GUCD1Q96NT3 240 aa13.49□□□□□ -0.25
VPS28-214ENST00000531032 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.49□□□□□ -0.25
VPS28-214ENST00000531032 ZHX1Q9UKY1 873 aaPredicted RBP13.49□□□□□ -0.25
VPS28-214ENST00000531032 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.49□□□□□ -0.251e-7■■■■□ 24.2
VPS28-214ENST00000531032 TMEM232C9JQI7 657 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 DLL1O00548 723 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 KIAA0355O15063 1070 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 PQBP1O60828 265 aaKnown RBP13.48□□□□□ -0.25
VPS28-214ENST00000531032 CST5P28325 142 aaPredicted RBP13.48□□□□□ -0.25
VPS28-214ENST00000531032 ACVR2BQ13705 512 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 PPP4R3BQ5MIZ7 849 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 FAM160B2Q86V87 743 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 NUP133Q8WUM0 1156 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 TOX2Q96NM4 488 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms