RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 RNF225M0QZC1 329 aaPredicted RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 TBC1D8O95759 1140 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 STAT6P42226 847 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 PRCPP42785 496 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 NT5C2P49902 561 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 ERVK-24P63145 666 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 TRIM14Q14142 442 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 GRM4Q14833 912 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 TYW1BQ6NUM6 668 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 ACRBPQ8NEB7 543 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 SRP68Q9UHB9 627 aaKnown RBP12.5□□□□□ -0.41
HDAC9-228ENST00000524023 MAD2L2Q9UI95 211 aa12.5□□□□□ -0.41
HDAC9-228ENST00000524023 CCDC194A0A1B0GVG4 234 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 ZBTB22O15209 634 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 NAALADL2Q58DX5 795 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 ZNF569Q5MCW4 686 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 DTHD1Q6ZMT9 781 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 SRGAP1Q7Z6B7 1085 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 CREBRFQ8IUR6 639 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 CCDC24Q8N4L8 307 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 DYNLL2Q96FJ2 89 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 NUP88Q99567 741 aaPredicted RBP12.49□□□□□ -0.41
HDAC9-228ENST00000524023 CDC23Q9UJX2 597 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 MAPK8IP1Q9UQF2 711 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 H7C1D1 291 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 SASH3O75995 380 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 TM4SF1P30408 202 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 USP5P45974 858 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 GNAQP50148 359 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 CHMP4BP1P59074 171 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 WWC2Q6AWC2 1192 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 CYP26C1Q6V0L0 522 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 IRF2BP1Q8IU81 584 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 ADSSL1Q8N142 457 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 UBXN6Q9BZV1 441 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 PCDHA6Q9UN73 950 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 PCDHA8Q9Y5H6 950 aa12.49□□□□□ -0.41
HDAC9-228ENST00000524023 ROBO3Q96MS0 1386 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 TUBB2AQ13885 445 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 SLC35G1Q2M3R5 365 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 JAKMIP3Q5VZ66 844 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 TPTE2Q6XPS3 522 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 CEP112Q8N8E3 955 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 DAGLBQ8NCG7 672 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 SH3RF3Q8TEJ3 882 aaPredicted RBP12.48□□□□□ -0.41
HDAC9-228ENST00000524023 TUBB2BQ9BVA1 445 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 TMEM60Q9H2L4 133 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 ZSWIM4Q9H7M6 989 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 MKNK2Q9HBH9 465 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 ARFGAP3Q9NP61 516 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 MYH1P12882 1939 aa12.48□□□□□ -0.41
HDAC9-228ENST00000524023 SBF2Q86WG5 1849 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 CTAGE9A4FU28 777 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 USP17L3A6NCW0 530 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 USP17L4A6NCW7 530 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 TRIM49BA6NDI0 452 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 PP2D1A8MPX8 630 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 CYTH3O43739 400 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 RPS6KA4O75676 772 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 ABL1P00519 1130 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 LDHBP07195 334 aaKnown RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 PARP1P09874 1014 aaKnown RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 KRT9P35527 623 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 UBXN1Q04323 297 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 KCNB1Q14721 858 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 KIF4BQ2VIQ3 1234 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 CCDC178Q5BJE1 867 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 GALNT17Q6IS24 598 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 USP17L1Q7RTZ2 530 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 SLC35F6Q8N357 371 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 CCDC148Q8NFR7 591 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 TCP11L1Q9NUJ3 509 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 NUTM2BA6NNL0 878 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 NUTM2EB1AL46 878 aaPredicted RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 STXBP3O00186 592 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 KLRC4O43908 158 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 ZPR1O75312 459 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 ARHGAP25P42331 645 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 INF2Q27J81 1249 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 RC3H1Q5TC82 1133 aaKnown RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 RASSF8Q8NHQ8 419 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 CCSER1Q9C0I3 900 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 BARHL2Q9NY43 387 aa12.47□□□□□ -0.41
HDAC9-228ENST00000524023 PUF60Q9UHX1 559 aaKnown RBP12.47□□□□□ -0.41
HDAC9-228ENST00000524023 NAV1Q8NEY1 1877 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 CCDC151A5D8V7 595 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 MYL1P05976 194 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 TSPY3P0CV98 308 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 TSPY8P0CW00 308 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 UBA7P41226 1012 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 HEATR3Q7Z4Q2 680 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 WDR66Q8TBY9 1149 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 FUT8Q9BYC5 575 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 KBTBD4Q9NVX7 518 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 MYO1AQ9UBC5 1043 aa12.46□□□□□ -0.41
HDAC9-228ENST00000524023 PALM3A6NDB9 673 aaPredicted RBP12.46□□□□□ -0.42
HDAC9-228ENST00000524023 LAD1O00515 517 aa12.46□□□□□ -0.42
HDAC9-228ENST00000524023 RHOBTB3O94955 611 aa12.46□□□□□ -0.42
HDAC9-228ENST00000524023 EEF1GP26641 437 aaKnown RBP12.46□□□□□ -0.42
HDAC9-228ENST00000524023 PMS1P54277 932 aaKnown RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms