RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	TROAP	Q12815	778 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	ME3	Q16798	604 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	SLFN13	Q68D06	897 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	GMCL1P1	Q8NEA9	526 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	NUP133	Q8WUM0	1156 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	SNX21	Q969T3	373 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	ZNF274	Q96GC6	653 aa	Predicted RBP	13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	HPS5	Q9UPZ3	1129 aa		13.92	□□□□□ -0.18
PVT1-215	ENST00000522963	ZBTB43	O43298	467 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	FLOT1	O75955	427 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	SNHG28	P0DPA3	235 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	PDHB	P11177	359 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	CTGF	P29279	349 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	MCM2	P49736	904 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	STK3	Q13188	491 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	PKN2	Q16513	984 aa	Known RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	FAM110C	Q1W6H9	321 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	FAM83B	Q5T0W9	1011 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	SYNE3	Q6ZMZ3	975 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	MICU3	Q86XE3	530 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	CCAR1	Q8IX12	1150 aa	Known RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	CCDC144CP	Q8IYA2	1237 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	LPAR1	Q92633	364 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	TRIM47	Q96LD4	638 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	NUP88	Q99567	741 aa	Predicted RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	CWC22	Q9HCG8	908 aa	Known RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	TXNRD2	Q9NNW7	524 aa		13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	RBM19	Q9Y4C8	960 aa	Known RBP	13.91	□□□□□ -0.18
PVT1-215	ENST00000522963	GOLGA8A	A7E2F4	631 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	TNPO2	O14787	897 aa	Known RBP	13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	WDR46	O15213	610 aa	Known RBP	13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	PFKFB2	O60825	505 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	CALM1	P0DP23	149 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	CALM2	P0DP24	149 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	CALM3	P0DP25	149 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	HOXD10	P28358	340 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	CCT2	P78371	535 aa	Known RBP	13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	COG2	Q14746	738 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	GRM4	Q14833	912 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	WDR78	Q5VTH9	848 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	GPRC5A	Q8NFJ5	357 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	DCAF4	Q8WV16	495 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	GMCL1	Q96IK5	515 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	RBPJL	Q9UBG7	517 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	PTPN22	Q9Y2R2	807 aa		13.9	□□□□□ -0.18
PVT1-215	ENST00000522963	NID2	Q14112	1375 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	CDC27	P30260	824 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	SLC1A4	P43007	532 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	METAP2	P50579	478 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	RCAN1	P53805	252 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	ZNF543	Q08ER8	600 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	ST3GAL1	Q11201	340 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	SCRN1	Q12765	414 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	PLS1	Q14651	629 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	CCDC96	Q2M329	555 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963		Q3C1V9	767 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	STAG2	Q8N3U4	1231 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	NECAB1	Q8N987	351 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	FANCB	Q8NB91	859 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	TMX3	Q96JJ7	454 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	MAP3K14	Q99558	947 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	SLK	Q9H2G2	1235 aa	Predicted RBP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	NCOA5	Q9HCD5	579 aa	Known RBP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	FBXO28	Q9NVF7	368 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	MAD2L2	Q9UI95	211 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	PTCH2	Q9Y6C5	1203 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	MYPN	Q86TC9	1320 aa		13.89	□□□□□ -0.19
PVT1-215	ENST00000522963	PALM3	A6NDB9	673 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963		K7ELQ4	463 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	MYC	P01106	439 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	PARP1	P09874	1014 aa	Known RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	GOLGA8H	P0CJ92	632 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	ADD1	P35611	737 aa	Known RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	ERVK-9	P63128	1117 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	ERVK-24	P63145	666 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	RTN1	Q16799	776 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	KCTD1	Q719H9	257 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	HSCB	Q8IWL3	235 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	CTCFL	Q8NI51	663 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	RAET1E	Q8TD07	263 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	COA7	Q96BR5	231 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	ATG4C	Q96DT6	458 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	GPCPD1	Q9NPB8	672 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	HOXC10	Q9NYD6	342 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	MORF4L1	Q9UBU8	362 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	SRRD	Q9UH36	339 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	GABRQ	Q9UN88	632 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	RABGAP1	Q9Y3P9	1069 aa		13.88	□□□□□ -0.19
PVT1-215	ENST00000522963	CNMD	O75829	334 aa		13.87	□□□□□ -0.19
PVT1-215	ENST00000522963	PLEKHA8P1	O95397	391 aa		13.87	□□□□□ -0.19
PVT1-215	ENST00000522963	GNRH1	P01148	92 aa		13.87	□□□□□ -0.19
PVT1-215	ENST00000522963	BMP3	P12645	472 aa		13.87	□□□□□ -0.19

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