RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CCDC155Q8N6L0 562 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 RASGRP4Q8TDF6 673 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 UBLCP1Q8WVY7 318 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 RRP15Q9Y3B9 282 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 HYOU1Q9Y4L1 999 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 MRFAP1Q9Y605 127 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 ASIC2Q16515 512 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 CPLX4Q7Z7G2 160 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 KLHL7Q8IXQ5 586 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 CARD10Q9BWT7 1032 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 TSKSQ9UJT2 592 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 ADGRG1Q9Y653 693 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 WDR17Q8IZU2 1322 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 RNF40O75150 1001 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 PCP11498 1178 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 KRT13P13646 458 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 ANTXR2P58335 489 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TNIP1Q15025 636 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 VWA3BQ502W6 1294 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SFMBT2Q5VUG0 894 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC114Q96M63 670 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TBC1D7Q9P0N9 293 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SETD1BQ9UPS6 1966 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CLTCQ00610 1675 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SEMA3EO15041 775 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 OR52Z1P0C646 297 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 MRPL12P52815 198 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 GNGT1P63211 74 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 HLFQ16534 295 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SGMS1Q86VZ5 419 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 MAPKAPK5Q8IW41 473 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 REXO1Q8N1G1 1221 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 STAG1Q8WVM7 1258 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CNOT6LQ96LI5 555 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CYP2D7A0A087X1C5 515 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TLDC2A0PJX2 215 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SNAP23O00161 211 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CETN3O15182 167 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TCP1P17987 556 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 CETN2P41208 172 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 KLHL30Q0D2K2 578 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 MTF1Q14872 753 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 HERC4Q5GLZ8 1057 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TCP11X2Q5H9J9 407 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 POTEDQ86YR6 584 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 NELFCDQ8IXH7 590 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 PLCD3Q8N3E9 789 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 ANKRD13CQ8N6S4 541 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TGFBRAP1Q8WUH2 860 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 ISCA1Q9BUE6 129 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 SLC39A2Q9NP94 309 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 BIN2Q9UBW5 565 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 RASAL2Q9UJF2 1139 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 PLEKHA8P1O95397 391 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 EIF6P56537 245 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 TRMT1LQ7Z2T5 733 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 WDR66Q8TBY9 1149 aa9.35□□□□□ -0.91
LIMCH1-216ENST00000512820 MROH7-TTC4A0A0A0MT08 1334 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 BUB1O43683 1085 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CEP104O60308 925 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GUCY1A2P33402 732 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 PPARDQ03181 441 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC24Q8N4L8 307 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 SELENOSQ9BQE4 189 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 PLCD4Q9BRC7 762 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 IRX2Q9BZI1 471 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 VIRMAQ69YN4 1812 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GOLGA8HP0CJ92 632 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 ADCY7P51828 1080 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 RPS8P62241 208 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 FMR1Q06787 632 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 ALX1Q15699 326 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC26Q8TAB7 109 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 BCAS4Q8TDM0 211 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CAPS2Q9BXY5 557 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 TMEM94Q12767 1356 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 SMIM23A6NLE4 172 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 RPL13P26373 211 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 IL6STP40189 918 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 PRPHP41219 470 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 RPS6KA1Q15418 735 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 DHTKD1Q96HY7 919 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 L2HGDHQ9H9P8 463 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 TMOD2Q9NZR1 351 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 HPS5Q9UPZ3 1129 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GDAQ9Y2T3 454 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CPDO75976 1380 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GOLGA8KD6RF30 607 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 POTEJP0CG39 1038 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GUCY2FP51841 1108 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 CUL4BQ13620 913 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 GALNT17Q6IS24 598 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 PIGBQ92521 554 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 UIMC1Q96RL1 719 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 NUCKS1Q9H1E3 243 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 ABHD10Q9NUJ1 306 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 FBXO2Q9UK22 296 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms