RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 MYPNQ86TC9 1320 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 PALM3A6NDB9 673 aaPredicted RBP17.26■□□□□ 0.35
RNF4-213ENST00000509388 CA12O43570 354 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 PLA2G6O60733 806 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 PDIA3P30101 505 aaKnown RBP17.26■□□□□ 0.35
RNF4-213ENST00000509388 GCLCP48506 637 aaPredicted RBP17.26■□□□□ 0.35
RNF4-213ENST00000509388 MCM2P49736 904 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 EVCP57679 992 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 STK3Q13188 491 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 SYDE2Q5VT97 1194 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 STAG2Q8N3U4 1231 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 SLKQ9H2G2 1235 aaPredicted RBP17.26■□□□□ 0.35
RNF4-213ENST00000509388 VAT1LQ9HCJ6 419 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 MAD2L2Q9UI95 211 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 LIMCH1Q9UPQ0 1083 aa17.26■□□□□ 0.35
RNF4-213ENST00000509388 CPLX1O14810 134 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 FDX1P10109 184 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 CCT2P78371 535 aaKnown RBP17.25■□□□□ 0.35
RNF4-213ENST00000509388 CRHR2Q13324 411 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 CPLX2Q6PUV4 134 aaKnown RBP17.25■□□□□ 0.35
RNF4-213ENST00000509388 BTNL9Q6UXG8 535 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 ATG4CQ96DT6 458 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 ZSCAN31Q96LW9 406 aaPredicted RBP17.25■□□□□ 0.35
RNF4-213ENST00000509388 PAGR1Q9BTK6 254 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 PRR12Q9ULL5 1215 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 TPCN1Q9ULQ1 816 aa17.25■□□□□ 0.35
RNF4-213ENST00000509388 SPDYE16A6NNV3 312 aaPredicted RBP17.24■□□□□ 0.35
RNF4-213ENST00000509388 TLR2O60603 784 aa17.24■□□□□ 0.35
RNF4-213ENST00000509388 TBC1D8O95759 1140 aa17.24■□□□□ 0.35
RNF4-213ENST00000509388 MB21D1Q8N884 522 aa17.24■□□□□ 0.35
RNF4-213ENST00000509388 SAGE1Q9NXZ1 904 aa17.24■□□□□ 0.35
RNF4-213ENST00000509388 MYH4Q9Y623 1939 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 PLS1Q14651 629 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 CCAR1Q8IX12 1150 aaKnown RBP17.23■□□□□ 0.35
RNF4-213ENST00000509388 ADGRF4Q8IZF3 695 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 CCDC82Q8N4S0 544 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 ANKRD13CQ8N6S4 541 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 GPRC5AQ8NFJ5 357 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 CPVLQ9H3G5 476 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 CPA4Q9UI42 421 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 HPS5Q9UPZ3 1129 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 RABGAP1Q9Y3P9 1069 aa17.23■□□□□ 0.35
RNF4-213ENST00000509388 VWA5AO00534 786 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 PFKFB2O60825 505 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 SMARCA1P28370 1054 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 ADD1P35611 737 aaKnown RBP17.22■□□□□ 0.35
RNF4-213ENST00000509388 SLC4A3P48751 1232 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 ME3Q16798 604 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 CCDC174Q6PII3 467 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 LBX2Q6XYB7 198 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 TMTC3Q6ZXV5 915 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 CPXCR1Q8N123 301 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 CMTR1Q8N1G2 835 aaKnown RBP17.22■□□□□ 0.35
RNF4-213ENST00000509388 SH2B1Q9NRF2 756 aaPredicted RBP17.22■□□□□ 0.35
RNF4-213ENST00000509388 WBP1LQ9NX94 342 aa17.22■□□□□ 0.35
RNF4-213ENST00000509388 LOC285556D6RIA3 1793 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 CDKL5O76039 1030 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 PLEKHA8P1O95397 391 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 CDC27P30260 824 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 CCNA1P78396 465 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 AKAP17AQ02040 695 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 HOMER1Q86YM7 354 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 SRBD1Q8N5C6 995 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 JMYQ8N9B5 988 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 PIBF1Q8WXW3 757 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 RRP36Q96EU6 259 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 SLC38A10Q9HBR0 1119 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 NCOA5Q9HCD5 579 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 CWC22Q9HCG8 908 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 RBPJLQ9UBG7 517 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 SEC63Q9UGP8 760 aaKnown RBP17.21■□□□□ 0.35
RNF4-213ENST00000509388 PNMA2Q9UL42 364 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 ADAMTS5Q9UNA0 930 aa17.21■□□□□ 0.35
RNF4-213ENST00000509388 STAT3P40763 770 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 SNAP25P60880 206 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 SCRN1Q12765 414 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 CDC37Q16543 378 aaPredicted RBP17.2■□□□□ 0.34
RNF4-213ENST00000509388 C17orf99Q6UX52 265 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 NECAB1Q8N987 351 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 SPZ1Q9BXG8 430 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 CFHR5Q9BXR6 569 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 RANBP17Q9H2T7 1088 aaKnown RBP17.2■□□□□ 0.34
RNF4-213ENST00000509388 RIOX1Q9H6W3 641 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 JMJD4Q9H9V9 463 aa17.2■□□□□ 0.34
RNF4-213ENST00000509388 RAVER2Q9HCJ3 691 aaKnown RBP17.2■□□□□ 0.34
RNF4-213ENST00000509388 OAZ1P54368 228 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 ERVK-9P63128 1117 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 ERVK-24P63145 666 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 TRAF1Q13077 416 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 TMEM132BQ14DG7 1078 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 FAM110CQ1W6H9 321 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 NBPF11Q86T75 865 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 TRIM22Q8IYM9 498 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 GTF3C6Q969F1 213 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 PIGSQ96S52 555 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 TEX13BQ9BXU2 312 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 FAM217BQ9NTX9 383 aaPredicted RBP17.19■□□□□ 0.34
RNF4-213ENST00000509388 BTBD7Q9P203 1132 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 PTPRFP10586 1907 aa17.19■□□□□ 0.34
RNF4-213ENST00000509388 NID2Q14112 1375 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms