RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SDHBP21912 280 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 RAB3GAP1Q15042 981 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 NBPF12Q5TAG4 269 aaPredicted RBP5.42□□□□□ -1.54
NUP54-208ENST00000508604 TMC3Q7Z5M5 1100 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 AEBP1Q8IUX7 1158 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 ZDHHC14Q8IZN3 488 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 FEZF2Q8TBJ5 459 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 GMIPQ9P107 970 aa5.42□□□□□ -1.54
NUP54-208ENST00000508604 TMEM82A0PJX8 343 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 CLEC3AO75596 197 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 CTSHP09668 335 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 CDR1P51861 262 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 FAM196AQ6ZSG2 479 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 TMC6Q7Z403 805 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 NLGN1Q8N2Q7 840 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 VTI1BQ9UEU0 232 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 ADAMTS20P59510 1910 aa5.41□□□□□ -1.54
NUP54-208ENST00000508604 A0A1W2PQ27 194 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 A0A1W2PQ64 194 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 A0A1W2PQC6 194 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 A0A1W2PQD8 194 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 ZC3H12DA2A288 527 aaKnown RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 IRS4O14654 1257 aaPredicted RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 TLR3O15455 904 aaKnown RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 SIGLEC6O43699 453 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 DNAJA2O60884 412 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 UBOX5O94941 541 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 PRAMEF1O95521 474 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 CYP4F8P98187 520 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 VMACQ2NL98 169 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 BBS9Q3SYG4 887 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 HSF5Q4G112 596 aaPredicted RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 LDHDQ86WU2 507 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 FAM129CQ86XR2 697 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 FAM161BQ96MY7 647 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 PWWP2AQ96N64 755 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 PLCD4Q9BRC7 762 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 CDADC1Q9BWV3 514 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 LUC7LQ9NQ29 371 aaKnown RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 CHST7Q9NS84 486 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 GPR55Q9Y2T6 319 aaPredicted RBP5.4□□□□□ -1.54
NUP54-208ENST00000508604 PCDHB14Q9Y5E9 798 aa5.4□□□□□ -1.54
NUP54-208ENST00000508604 FADS2P1A8MWK0 482 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 NUDT19A8MXV4 375 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 EFEMP2O95967 443 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 PRKCAP17252 672 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 CCNFP41002 786 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 SKOR2Q2VWA4 1001 aaPredicted RBP5.4□□□□□ -1.55
NUP54-208ENST00000508604 ZPBP2Q6X784 338 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 LINC01356Q8N9X3 169 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 EAF1Q96JC9 268 aaPredicted RBP5.4□□□□□ -1.55
NUP54-208ENST00000508604 TEPSINQ96N21 525 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 KLHL14Q9P2G3 628 aa5.4□□□□□ -1.55
NUP54-208ENST00000508604 A0A1W2PQ45 241 aaPredicted RBP5.39□□□□□ -1.55
NUP54-208ENST00000508604 A0A1W2PQY0 241 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 ADRB1P08588 477 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 TMEFF1Q8IYR6 380 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 NUP43Q8NFH3 380 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 FBXO27Q8NI29 283 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 PRDM14Q9GZV8 571 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 MKRN2Q9H000 416 aaKnown RBP5.39□□□□□ -1.55
NUP54-208ENST00000508604 FBXL21Q9UKT6 434 aa5.39□□□□□ -1.55
NUP54-208ENST00000508604 SUPT16HQ9Y5B9 1047 aaKnown RBP5.39□□□□□ -1.55
NUP54-208ENST00000508604 BUB1BO60566 1050 aaPredicted RBP5.38□□□□□ -1.55
NUP54-208ENST00000508604 PFKLP17858 780 aa5.38□□□□□ -1.55
NUP54-208ENST00000508604 SNW1Q13573 536 aaKnown RBP5.38□□□□□ -1.55
NUP54-208ENST00000508604 SND1Q7KZF4 910 aaKnown RBP eCLIP5.38□□□□□ -1.55
NUP54-208ENST00000508604 EPB41L4AQ9HCS5 686 aaPredicted RBP5.38□□□□□ -1.55
NUP54-208ENST00000508604 BRMS1Q9HCU9 246 aa5.38□□□□□ -1.55
NUP54-208ENST00000508604 PCDHB12Q9Y5F1 795 aa5.38□□□□□ -1.55
NUP54-208ENST00000508604 A0A1W2PQJ5 194 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 MEIS1O00470 390 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 BMP8BP34820 402 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 PLP2Q04941 152 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 NR1I3Q14994 352 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 CDCP2Q5VXM1 449 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 OVOS1Q6IE37 1185 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 FRMD5Q7Z6J6 570 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 TRAIPQ9BWF2 469 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 LRRC3Q9BY71 257 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 ATE1O95260 518 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 KCNC1P48547 511 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 SPATS1Q496A3 300 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 ZC3H14Q6PJT7 736 aaKnown RBP5.37□□□□□ -1.55
NUP54-208ENST00000508604 NLRC3Q7RTR2 1065 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 SLCO6A1Q86UG4 719 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 IGDCC3Q8IVU1 814 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 NAT16Q8N8M0 369 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 ZNF512BQ96KM6 892 aaPredicted RBP5.37□□□□□ -1.55
NUP54-208ENST00000508604 CNNM2Q9H8M5 875 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 KBTBD4Q9NVX7 518 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 ERVK13-1Q9NX77 482 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 ACSL6Q9UKU0 697 aa5.37□□□□□ -1.55
NUP54-208ENST00000508604 POLR2BP30876 1174 aaKnown RBP5.36□□□□□ -1.55
NUP54-208ENST00000508604 EIF4A3P38919 411 aaKnown RBP5.36□□□□□ -1.55
NUP54-208ENST00000508604 TARBP2Q15633 366 aaKnown RBP5.36□□□□□ -1.55
NUP54-208ENST00000508604 LRRFIP1Q32MZ4 808 aaKnown RBP5.36□□□□□ -1.55
NUP54-208ENST00000508604 SYT8Q8NBV8 401 aa5.36□□□□□ -1.55
NUP54-208ENST00000508604 DSCC1Q9BVC3 393 aa5.36□□□□□ -1.55
NUP54-208ENST00000508604 GFOD1Q9NXC2 390 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms