RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CCNA1P78396 465 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 COG2Q14746 738 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 SWT1Q5T5J6 900 aaKnown RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 SIAH1Q8IUQ4 282 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 TRMT44Q8IYL2 757 aaKnown RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 PI4K2BQ8TCG2 481 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 LPAR1Q92633 364 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 DYNLL2Q96FJ2 89 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 CRBNQ96SW2 442 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 SH2D4AQ9H788 454 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 KANSL2Q9H9L4 492 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 ARPP21Q9UBL0 812 aaPredicted RBP9.57□□□□□ -0.88
SCN1A-207ENST00000507401 TMX2Q9Y320 296 aa9.57□□□□□ -0.88
SCN1A-207ENST00000507401 GSG1L2A8MUP6 293 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 INHAP05111 366 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 ELNP15502 786 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 MX1P20591 662 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 NFKBIBQ15653 356 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 ANKRD45Q5TZF3 282 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 CCAR1Q8IX12 1150 aaKnown RBP9.56□□□□□ -0.88
SCN1A-207ENST00000507401 U2AF1L4Q8WU68 220 aaKnown RBP9.56□□□□□ -0.88
SCN1A-207ENST00000507401 SOCS4Q8WXH5 440 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 USP6NLQ92738 828 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 OSBP2Q969R2 916 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 NUDT12Q9BQG2 462 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 RPAP3Q9H6T3 665 aaPredicted RBP9.56□□□□□ -0.88
SCN1A-207ENST00000507401 ZNF287Q9HBT7 754 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 ARHGEF10LQ9HCE6 1279 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 PAK6Q9NQU5 681 aaPredicted RBP9.56□□□□□ -0.88
SCN1A-207ENST00000507401 STAP2Q9UGK3 403 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 BRCA2P51587 3418 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 RPTORQ8N122 1335 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 SALL3Q9BXA9 1300 aa9.56□□□□□ -0.88
SCN1A-207ENST00000507401 BAZ2AQ9UIF9 1905 aaKnown RBP9.55□□□□□ -0.88
SCN1A-207ENST00000507401 CYP2D7A0A087X1C5 515 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 CNMDO75829 334 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 HMGCRP04035 888 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 AKR1B1P15121 316 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 ZYXQ15942 572 aaKnown RBP9.55□□□□□ -0.88
SCN1A-207ENST00000507401 MORN1Q5T089 497 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 PLEKHH3Q7Z736 793 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 UBE2Q1Q7Z7E8 422 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 SLC44A5Q8NCS7 719 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 UNC93B1Q9H1C4 597 aa9.55□□□□□ -0.88
SCN1A-207ENST00000507401 RWDD1Q9H446 243 aaPredicted RBP9.55□□□□□ -0.88
SCN1A-207ENST00000507401 HMX1Q9NP08 348 aaPredicted RBP9.55□□□□□ -0.88
SCN1A-207ENST00000507401 MYH8P13535 1937 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 MKI67P46013 3256 aaKnown RBP9.54□□□□□ -0.88
SCN1A-207ENST00000507401 SLC15A5A6NIM6 579 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 GPAA1O43292 621 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 STRNO43815 780 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 TFRCP02786 760 aaKnown RBP9.54□□□□□ -0.88
SCN1A-207ENST00000507401 APPP05067 770 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 CYP2B6P20813 491 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 FECHP22830 423 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 RGS2P41220 211 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 ICA1Q05084 483 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 TJAP1Q5JTD0 557 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 MAP3K21Q5TCX8 1036 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 TSHZ3Q63HK5 1081 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 GPR142Q7Z601 462 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 IFNL3Q8IZI9 196 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 MB21D1Q8N884 522 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 ANKLE1Q8NAG6 615 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 OTUD7AQ8TE49 926 aaPredicted RBP9.54□□□□□ -0.88
SCN1A-207ENST00000507401 EVI5LQ96CN4 794 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 SHISA4Q96DD7 197 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 PAGR1Q9BTK6 254 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 NACAP1Q9BZK3 213 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 PORCNQ9H237 461 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 VCPKMTQ9H867 229 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 MKNK2Q9HBH9 465 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 PLXNB2O15031 1838 aa9.54□□□□□ -0.88
SCN1A-207ENST00000507401 MINDY4BA8MYZ0 360 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 SMIM22K7EJ46 135 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 WDR46O15213 610 aaKnown RBP9.53□□□□□ -0.88
SCN1A-207ENST00000507401 PEX10O60683 326 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 HOXC6P09630 235 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 EEF2P13639 858 aaKnown RBP9.53□□□□□ -0.88
SCN1A-207ENST00000507401 PDE1AP54750 535 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 MAP2K5Q13163 448 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 HIC1Q14526 733 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 ZMYM1Q5SVZ6 1142 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 SMYD5Q6GMV2 418 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 SMC5Q8IY18 1101 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 ZNF444Q8N0Y2 327 aaPredicted RBP9.53□□□□□ -0.88
SCN1A-207ENST00000507401 SHCBP1Q8NEM2 672 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 MKL1Q969V6 931 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 DEFB118Q96PH6 123 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 FSD1Q9BTV5 496 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 HTATIP2Q9BUP3 242 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.53□□□□□ -0.88
SCN1A-207ENST00000507401 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.53□□□□□ -0.88
SCN1A-207ENST00000507401 BTBD7Q9P203 1132 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 NYAP2Q9P242 653 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 SYNPO2Q9UMS6 1093 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 ADAMTS5Q9UNA0 930 aa9.53□□□□□ -0.88
SCN1A-207ENST00000507401 ROBO3Q96MS0 1386 aa9.52□□□□□ -0.88
SCN1A-207ENST00000507401 M0R2C6 588 aa9.52□□□□□ -0.89
SCN1A-207ENST00000507401 SLC3A2P08195 630 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms