RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 MAPK4P31152 587 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 CCNA1P78396 465 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 IKQ13123 557 aaPredicted RBP21.3■■□□□ 1
NPHP4-210ENST00000506941 PLS1Q14651 629 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 WTAPQ15007 396 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 FAM160B2Q86V87 743 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 CHURC1Q8WUH1 139 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 NEK1Q96PY6 1258 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 LY9Q9HBG7 655 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 SLC38A10Q9HBR0 1119 aa21.3■■□□□ 1
NPHP4-210ENST00000506941 RBBP6Q7Z6E9 1792 aaKnown RBP21.29■■□□□ 1
NPHP4-210ENST00000506941 ERICH2A1L162 156 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 GOLGA8HP0CJ92 632 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 SLC16A2P36021 539 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 SART3Q15020 963 aaKnown RBP21.29■■□□□ 1
NPHP4-210ENST00000506941 BTNL9Q6UXG8 535 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 GPR142Q7Z601 462 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 COA7Q96BR5 231 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 LRRC2Q9BYS8 371 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 PRR12Q9ULL5 1215 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 BRCA2P51587 3418 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 LCTP09848 1927 aa21.29■■□□□ 1
NPHP4-210ENST00000506941 SH2B2O14492 632 aaPredicted RBP21.28■■□□□ 1
NPHP4-210ENST00000506941 HOXD10P28358 340 aa21.28■■□□□ 1
NPHP4-210ENST00000506941 KRT32Q14532 448 aa21.28■■□□□ 1
NPHP4-210ENST00000506941 MTA3Q9BTC8 594 aa21.28■■□□□ 1
NPHP4-210ENST00000506941 GJD2Q9UKL4 321 aa21.28■■□□□ 1
NPHP4-210ENST00000506941 HPS5Q9UPZ3 1129 aa21.28■■□□□ 1
NPHP4-210ENST00000506941 ZBED4O75132 1171 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 SEC24BO95487 1268 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 CPA1P15085 419 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 ERCC3P19447 782 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 FLT3LGP49771 235 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 PRMT2P55345 433 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 SNAP25P60880 206 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 EXOSC10Q01780 885 aaKnown RBP21.27■■□□□ 1
NPHP4-210ENST00000506941 C8orf34Q49A92 452 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 SYDE2Q5VT97 1194 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 PLEKHH3Q7Z736 793 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 RIOX2Q8IUF8 465 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 CCAR1Q8IX12 1150 aaKnown RBP21.27■■□□□ 1
NPHP4-210ENST00000506941 SHCBP1Q8NEM2 672 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 ABHD8Q96I13 439 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 TMEM87BQ96K49 555 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 TCEANC2Q96MN5 208 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 CPVLQ9H3G5 476 aa21.27■■□□□ 1
NPHP4-210ENST00000506941 ZNF536O15090 1300 aa21.27■□□□□ 0.99
NPHP4-210ENST00000506941 ATP2A1O14983 1001 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 STAT3P40763 770 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 MORN1Q5T089 497 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 GPATCH4Q5T3I0 446 aaKnown RBP21.26■□□□□ 0.99
NPHP4-210ENST00000506941 WDR78Q5VTH9 848 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 SNRNP48Q6IEG0 339 aaKnown RBP21.26■□□□□ 0.99
NPHP4-210ENST00000506941 CPXCR1Q8N123 301 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 JAKMIP1Q96N16 626 aaKnown RBP21.26■□□□□ 0.99
NPHP4-210ENST00000506941 RAVER2Q9HCJ3 691 aaKnown RBP21.26■□□□□ 0.99
NPHP4-210ENST00000506941 RIPK3Q9Y572 518 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 WDR19Q8NEZ3 1342 aa21.26■□□□□ 0.99
NPHP4-210ENST00000506941 MCM3APO60318 1980 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 PARP1P09874 1014 aaKnown RBP21.25■□□□□ 0.99
NPHP4-210ENST00000506941 TROAPQ12815 778 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 ASPRV1Q53RT3 343 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 DHX32Q7L7V1 743 aaKnown RBP21.25■□□□□ 0.99
NPHP4-210ENST00000506941 NCAPG2Q86XI2 1143 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 STAG2Q8N3U4 1231 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 USP6NLQ92738 828 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 TEX13BQ9BXU2 312 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 RANBP17Q9H2T7 1088 aaKnown RBP21.25■□□□□ 0.99
NPHP4-210ENST00000506941 MAD2L2Q9UI95 211 aa21.25■□□□□ 0.99
NPHP4-210ENST00000506941 SLC25A27O95847 323 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 FDX1P10109 184 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 PTPREP23469 700 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 LIFRP42702 1097 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 OAZ1P54368 228 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 GRB14Q14449 540 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 GRM4Q14833 912 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 ZNF654Q8IZM8 581 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 RAET1EQ8TD07 263 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 MYL10Q9BUA6 226 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 UBA5Q9GZZ9 404 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 MROH8Q9H579 483 aa21.24■□□□□ 0.99
NPHP4-210ENST00000506941 CWC22Q9HCG8 908 aaKnown RBP21.24■□□□□ 0.99
NPHP4-210ENST00000506941 TAL1P17542 331 aaPredicted RBP21.23■□□□□ 0.99
NPHP4-210ENST00000506941 IRF5Q13568 498 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 CCDC174Q6PII3 467 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 CATIPQ7Z7H3 387 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 SOCS4Q8WXH5 440 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 AGBL1Q96MI9 1066 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 NUDT12Q9BQG2 462 aa21.23■□□□□ 0.99
NPHP4-210ENST00000506941 CTDP1Q9Y5B0 961 aaPredicted RBP21.23■□□□□ 0.99
NPHP4-210ENST00000506941 PALM3A6NDB9 673 aaPredicted RBP21.22■□□□□ 0.99
NPHP4-210ENST00000506941 SLC15A5A6NIM6 579 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 HMGB1P09429 215 aaKnown RBP21.22■□□□□ 0.99
NPHP4-210ENST00000506941 ELNP15502 786 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 SLC35G1Q2M3R5 365 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 SGMS1Q86VZ5 419 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 SH3TC2Q8TF17 1288 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 IVNS1ABPQ9Y6Y0 642 aa21.22■□□□□ 0.99
NPHP4-210ENST00000506941 FRMPD3Q5JV73 1810 aa21.21■□□□□ 0.99
NPHP4-210ENST00000506941 CCDC69A6NI79 296 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms