RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 P2RX7Q99572 595 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 SLF1Q9BQI6 1058 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 PAGR1Q9BTK6 254 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 UBA5Q9GZZ9 404 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 VAT1LQ9HCJ6 419 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 ZCCHC17Q9NP64 241 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 BRPF3Q9ULD4 1205 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 KLRF2D3W0D1 207 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 HAX1O00165 279 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 GNAQP50148 359 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 HERVK_113P62684 666 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 CCT2P78371 535 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 ZNF543Q08ER8 600 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 TROAPQ12815 778 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 PLS1Q14651 629 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 GRM4Q14833 912 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 RTN1Q16799 776 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 APOA5Q6Q788 366 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 STAG2Q8N3U4 1231 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 FBXL16Q8N461 479 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 CCDC82Q8N4S0 544 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 ANKRD13CQ8N6S4 541 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 FANCBQ8NB91 859 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 IL17RAQ96F46 866 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 ALDH8A1Q9H2A2 487 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 SLKQ9H2G2 1235 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 CWC22Q9HCG8 908 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 FBXO28Q9NVF7 368 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 RBM28Q9NW13 759 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 CPA4Q9UI42 421 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 MAD2L2Q9UI95 211 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 PPP1R9AQ9ULJ8 1098 aa9.56□□□□□ -0.88
LIMCH1-206ENST00000505705 CCDC196A0A1B0GTZ2 297 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 SPDYE16A6NNV3 312 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 CPLX1O14810 134 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 TLR2O60603 784 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 ECM2O94769 699 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 SNHG28P0DPA3 235 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 GCLCP48506 637 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 CRHR2Q13324 411 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 SYDE2Q5VT97 1194 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 CCDC174Q6PII3 467 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 CPXCR1Q8N123 301 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 IL27Q8NEV9 243 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 PIBF1Q8WXW3 757 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 ATG4CQ96DT6 458 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 ZNF274Q96GC6 653 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 MAP3K14Q99558 947 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 KIF2CQ99661 725 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 AGXT2Q9BYV1 514 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 WBP1LQ9NX94 342 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 SAGE1Q9NXZ1 904 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 TSKSQ9UJT2 592 aa9.55□□□□□ -0.88
LIMCH1-206ENST00000505705 PALM3A6NDB9 673 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 VWA5AO00534 786 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 PLA2G6O60733 806 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 FDX1P10109 184 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 PDIA3P30101 505 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 SNAP25P60880 206 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 AKAP17AQ02040 695 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 KIF22Q14807 665 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 PPP2R5BQ15173 497 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 WDR78Q5VTH9 848 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 CPLX2Q6PUV4 134 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 HOMER1Q86YM7 354 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 ADGRF4Q8IZF3 695 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 CMTR1Q8N1G2 835 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 MB21D1Q8N884 522 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 GPRC5AQ8NFJ5 357 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 ZSCAN31Q96LW9 406 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 LZTS2Q9BRK4 669 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 CPVLQ9H3G5 476 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 SEC63Q9UGP8 760 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 PRR12Q9ULL5 1215 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 TPCN1Q9ULQ1 816 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 LIMCH1Q9UPQ0 1083 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 RABGAP1Q9Y3P9 1069 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 MYPNQ86TC9 1320 aa9.54□□□□□ -0.88
LIMCH1-206ENST00000505705 LOC285556D6RIA3 1793 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 PLEKHA8P1O95397 391 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 HSPA1AP0DMV8 641 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 HSPA1BP0DMV9 641 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 ADD1P35611 737 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 STAT3P40763 770 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 MCM2P49736 904 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 RCAN1P53805 252 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 CCNA1P78396 465 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 SP3Q02447 781 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 BTNL9Q6UXG8 535 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 LBX2Q6XYB7 198 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 JMYQ8N9B5 988 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 RRP36Q96EU6 259 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 RAVER2Q9HCJ3 691 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 RBPJLQ9UBG7 517 aa9.53□□□□□ -0.88
LIMCH1-206ENST00000505705 PTPRFP10586 1907 aa9.52□□□□□ -0.88
LIMCH1-206ENST00000505705 GPR25O00155 361 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 PEX10O60683 326 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 CDKL5O76039 1030 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 CDC27P30260 824 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 EVCP57679 992 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms