RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PPFIBP1Q86W92 1011 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 MAPKAPK5Q8IW41 473 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 ATRIPQ8WXE1 791 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 SRRTQ9BXP5 876 aaKnown RBP11.15□□□□□ -0.62
CLIP1-204ENST00000501271 TMEM60Q9H2L4 133 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 RWDD2AQ9UIY3 292 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 GDAQ9Y2T3 454 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 LEMD3Q9Y2U8 911 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 CCDC194A0A1B0GVG4 234 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 STXBP3O00186 592 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 RPN1P04843 607 aaKnown RBP11.15□□□□□ -0.63
CLIP1-204ENST00000501271 RASA1P20936 1047 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 CASQ1P31415 396 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 CASP14P31944 242 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 FXR1P51114 621 aaKnown RBP eCLIP11.15□□□□□ -0.63
CLIP1-204ENST00000501271 PPP4CP60510 307 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 PAK1Q13153 545 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 FILIP1LQ4L180 1135 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 NAALADL2Q58DX5 795 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 ZNF658Q5TYW1 1059 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-204ENST00000501271 HEATR3Q7Z4Q2 680 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 MNS1Q8NEH6 495 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 NELFBQ8WX92 580 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 TMEM47Q9BQJ4 181 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 RTFDC1Q9BY42 306 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-204ENST00000501271 DISC1Q9NRI5 854 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 FAM53CQ9NYF3 392 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 STX8Q9UNK0 236 aa11.15□□□□□ -0.63
CLIP1-204ENST00000501271 BAG3O95817 575 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 CCDC175P0C221 793 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 GOLGA8HP0CJ92 632 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 RFC4P35249 363 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 STAT6P42226 847 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 GSTO1P78417 241 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 INF2Q27J81 1249 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 ZNF804AQ7Z570 1209 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 CNBD1Q8NA66 436 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 DAGLBQ8NCG7 672 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 UBXN4Q92575 508 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 IRX2Q9BZI1 471 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 CPVLQ9H3G5 476 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 TCP11L1Q9NUJ3 509 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 LIMA1Q9UHB6 759 aaKnown RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 MAPK8IP1Q9UQF2 711 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 MRFAP1Q9Y605 127 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 ITIH6Q6UXX5 1313 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 EP400Q96L91 3159 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 PALM3A6NDB9 673 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 TXLNAP40222 546 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 PRCPP42785 496 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 NT5C2P49902 561 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 GNAQP50148 359 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 MAP3K9P80192 1104 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 UTP14CQ5TAP6 766 aaKnown RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 AMOTL1Q8IY63 956 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 ZNF444Q8N0Y2 327 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 NAA15Q9BXJ9 866 aaKnown RBP11.14□□□□□ -0.63
CLIP1-204ENST00000501271 BARHL2Q9NY43 387 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 TAB2Q9NYJ8 693 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 ADGRG1Q9Y653 693 aa11.14□□□□□ -0.63
CLIP1-204ENST00000501271 EFCAB8A8MWE9 144 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 BTDP43251 543 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 GPSM2P81274 684 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 DTHD1Q6ZMT9 781 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 KRT222Q8N1A0 295 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 CCDC148Q8NFR7 591 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 LRRC15Q8TF66 581 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 VPS16Q9H269 839 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 LZTFL1Q9NQ48 299 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 RMND1Q9NWS8 449 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 FOCADQ5VW36 1801 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 TRIM49BA6NDI0 452 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 LRRC10BA6NIK2 292 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 KCNJ18B7U540 433 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 RNF225M0QZC1 329 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-204ENST00000501271 N4BP3O15049 544 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 COPB1P53618 953 aaKnown RBP11.13□□□□□ -0.63
CLIP1-204ENST00000501271 KCNJ12Q14500 433 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 CCDC178Q5BJE1 867 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 TCP11X2Q5H9J9 407 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 TRAPPC3LQ5T215 181 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 FAM196AQ6ZSG2 479 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 CNGA4Q8IV77 575 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 GTPBP4Q9BZE4 634 aaKnown RBP11.13□□□□□ -0.63
CLIP1-204ENST00000501271 EPC1Q9H2F5 836 aa11.13□□□□□ -0.63
CLIP1-204ENST00000501271 IGSF3O75054 1194 aa11.12□□□□□ -0.63
CLIP1-204ENST00000501271 FECHP22830 423 aa11.12□□□□□ -0.63
CLIP1-204ENST00000501271 PRR5LQ6MZQ0 368 aa11.12□□□□□ -0.63
CLIP1-204ENST00000501271 C15orf52Q6ZUT6 534 aaKnown RBP11.12□□□□□ -0.63
CLIP1-204ENST00000501271 CCDC12Q8WUD4 166 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-204ENST00000501271 PLIN2Q99541 437 aa11.12□□□□□ -0.63
CLIP1-204ENST00000501271 UBR3Q6ZT12 1888 aa11.12□□□□□ -0.63
CLIP1-204ENST00000501271 KLRF2D3W0D1 207 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 KLRC4O43908 158 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 UFL1O94874 794 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 CDK8P49336 464 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 PMS1P54277 932 aaKnown RBP11.11□□□□□ -0.63
CLIP1-204ENST00000501271 ERVK-24P63145 666 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 PPP2R3AQ06190 1150 aa11.11□□□□□ -0.63
CLIP1-204ENST00000501271 SPAG1Q07617 926 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms