RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZBTB21Q9ULJ3 1066 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 GOLGA8HP0CJ92 632 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 MCM7P33993 719 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 LINC00301Q8NCQ3 95 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 PIGSQ96S52 555 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 MAGEF1Q9HAY2 307 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 KRT18P05783 430 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 CDK11BP21127 795 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 LONP1P36776 959 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 KRT79Q5XKE5 535 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 ARL6IP4Q66PJ3 421 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 AK8Q96MA6 479 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 MKRN1Q9UHC7 482 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 PALM3A6NDB9 673 aaPredicted RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 SHMT1P34896 483 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 NFIAQ12857 509 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 CMTR1Q8N1G2 835 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 CCDC88AQ3V6T2 1871 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 GCOM1H8Y6P7 765 aaPredicted RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 POLR2MP0CAP2 368 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 PDHBP11177 359 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 STAT6P42226 847 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 RASSF7Q02833 373 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 ZNF174Q15697 407 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 CDC37Q16543 378 aaPredicted RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 ZNF579Q8NAF0 562 aaKnown RBP9.5□□□□□ -0.89
USP54-215ENST00000497106 GMCL1Q96IK5 515 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 PHF20Q9BVI0 1012 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 PCDHA1Q9Y5I3 950 aa9.5□□□□□ -0.89
USP54-215ENST00000497106 TIAM2Q8IVF5 1701 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 ABCB11O95342 1321 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 C19orf81C9J6K1 198 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 WDR46O15213 610 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 LETM2Q2VYF4 491 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 FILIP1LQ4L180 1135 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 HAUS3Q68CZ6 603 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 SRBD1Q8N5C6 995 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 ZNF384Q8TF68 577 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 F5H6K3 240 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 FDPSP14324 419 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 ZNF280AP59817 542 aaPredicted RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 KLRC3Q07444 240 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 NTRK3Q16288 839 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 CAMK4Q16566 473 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 PNMA8AQ86V59 439 aaPredicted RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 SLFN12Q8IYM2 578 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 RBM46Q8TBY0 533 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 DDX4Q9NQI0 724 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 KCNH3Q9ULD8 1083 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 ATRNL1Q5VV63 1379 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 YDJCA8MPS7 323 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 NEMFO60524 1076 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 SAMD3Q8N6K7 520 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 FAM200AQ8TCP9 573 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 GPKOWQ92917 476 aaPredicted RBP eCLIP9.49□□□□□ -0.89
USP54-215ENST00000497106 FHDC1Q9C0D6 1143 aaPredicted RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 UBA5Q9GZZ9 404 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 FAM198AQ9UFP1 575 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 MAD2L2Q9UI95 211 aa9.49□□□□□ -0.89
USP54-215ENST00000497106 ZC3H4Q9UPT8 1303 aaKnown RBP9.49□□□□□ -0.89
USP54-215ENST00000497106 CCNT1O60563 726 aaKnown RBP9.48□□□□□ -0.89
USP54-215ENST00000497106 GABPAQ06546 454 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 FAM173BQ6P4H8 233 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 MKL1Q969V6 931 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 KIFC2Q96AC6 838 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 CUEDC2Q9H467 287 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 USP17L10C9JJH3 530 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 FGFR1OPO95684 399 aaKnown RBP9.48□□□□□ -0.89
USP54-215ENST00000497106 JAKMIP3Q5VZ66 844 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 RRAGBQ5VZM2 374 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 KCTD1Q719H9 257 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 VCPKMTQ9H867 229 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 MYH13Q9UKX3 1938 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 KDM3AQ9Y4C1 1321 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 SLC26A4O43511 780 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 OR52Z1P0C646 297 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 COPB2P35606 906 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 KRT26Q7Z3Y9 468 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 SLF1Q9BQI6 1058 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 MAGEC2Q9UBF1 373 aaPredicted RBP9.48□□□□□ -0.89
USP54-215ENST00000497106 PCDHA7Q9UN72 937 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 TUBGCP6Q96RT7 1819 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 WNT10BO00744 389 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 CAP2P40123 477 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 ST3GAL1Q11201 340 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 CALCRLQ16602 461 aa9.48□□□□□ -0.89
USP54-215ENST00000497106 EAPPQ56P03 285 aaPredicted RBP9.48□□□□□ -0.89
USP54-215ENST00000497106 SRPRBQ9Y5M8 271 aaKnown RBP9.48□□□□□ -0.89
USP54-215ENST00000497106 hCG_1642624A0A1W2PR95 340 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 DDTLA6NHG4 134 aaPredicted RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 SENP2Q9HC62 589 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 RIC8AQ9NPQ8 531 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 CLIC4Q9Y696 253 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 QSER1Q2KHR3 1735 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 NRXN2Q9P2S2 1712 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 GADD45BO75293 160 aaPredicted RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 IRX3P78415 501 aaPredicted RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 WWC2Q6AWC2 1192 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 TATDN1Q6P1N9 297 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 MIGA2Q7L4E1 593 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms