RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 POTEEQ6S8J3 1075 aa19.22■□□□□ 0.67
SF3A1-209ENST00000496189 DPP9Q86TI2 863 aa19.22■□□□□ 0.67
SF3A1-209ENST00000496189 NCOA7Q8NI08 942 aa19.22■□□□□ 0.67
SF3A1-209ENST00000496189 NKX2-3Q8TAU0 364 aa19.22■□□□□ 0.67
SF3A1-209ENST00000496189 CHMP4CQ96CF2 233 aa19.22■□□□□ 0.67
SF3A1-209ENST00000496189 RBM8AQ9Y5S9 174 aaKnown RBP19.22■□□□□ 0.67
SF3A1-209ENST00000496189 PARP14Q460N5 1801 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 PLA2G6O60733 806 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 INHAP05111 366 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 CYP21A2P08686 494 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 SLC4A3P48751 1232 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 KCTD2Q14681 263 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 MORN1Q5T089 497 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 SNRNP48Q6IEG0 339 aaKnown RBP19.21■□□□□ 0.67
SF3A1-209ENST00000496189 KCTD1Q719H9 257 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 RIOX2Q8IUF8 465 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 ABRAQ8N0Z2 381 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 RNF208Q9H0X6 261 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 ZSWIM5Q9P217 1185 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 RLFQ13129 1914 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 TNKSO95271 1327 aa19.21■□□□□ 0.67
SF3A1-209ENST00000496189 OAZ1P54368 228 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 MLLT1Q03111 559 aaPredicted RBP19.2■□□□□ 0.66
SF3A1-209ENST00000496189 GRB14Q14449 540 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 GPATCH4Q5T3I0 446 aaKnown RBP19.2■□□□□ 0.66
SF3A1-209ENST00000496189 IFIT1BQ5T764 474 aaKnown RBP19.2■□□□□ 0.66
SF3A1-209ENST00000496189 CPXCR1Q8N123 301 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 SLC38A10Q9HBR0 1119 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 FBXO40Q9UH90 709 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 GTF3C3Q9Y5Q9 886 aa19.2■□□□□ 0.66
SF3A1-209ENST00000496189 E7EWF7 191 aa19.19■□□□□ 0.66
SF3A1-209ENST00000496189 EIF5BO60841 1220 aaKnown RBP19.19■□□□□ 0.66
SF3A1-209ENST00000496189 CCL5P13501 91 aa19.19■□□□□ 0.66
SF3A1-209ENST00000496189 ADORA2AP29274 412 aa19.19■□□□□ 0.66
SF3A1-209ENST00000496189 PNMA1Q8ND90 353 aa19.19■□□□□ 0.66
SF3A1-209ENST00000496189 MMP19Q99542 508 aa19.19■□□□□ 0.66
SF3A1-209ENST00000496189 LSG1Q9H089 658 aaKnown RBP19.19■□□□□ 0.66
SF3A1-209ENST00000496189 ZNF214Q9UL59 606 aaPredicted RBP19.19■□□□□ 0.66
SF3A1-209ENST00000496189 ATP2A1O14983 1001 aa19.18■□□□□ 0.66
SF3A1-209ENST00000496189 REC8O95072 547 aa19.18■□□□□ 0.66
SF3A1-209ENST00000496189 CAPN2P17655 700 aa19.18■□□□□ 0.66
SF3A1-209ENST00000496189 MFSD14CQ5VZR4 134 aa19.18■□□□□ 0.66
SF3A1-209ENST00000496189 USP6NLQ92738 828 aa19.18■□□□□ 0.66
SF3A1-209ENST00000496189 HMX1Q9NP08 348 aaPredicted RBP19.18■□□□□ 0.66
SF3A1-209ENST00000496189 COL11A1P12107 1806 aaPredicted RBP19.18■□□□□ 0.66
SF3A1-209ENST00000496189 PLXNB2O15031 1838 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 IFIT3O14879 490 aaKnown RBP19.17■□□□□ 0.66
SF3A1-209ENST00000496189 PDHBP11177 359 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 RGS19P49795 217 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 MTFR1Q15390 333 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 ENAHQ8N8S7 591 aaPredicted RBP19.17■□□□□ 0.66
SF3A1-209ENST00000496189 REPS2Q8NFH8 660 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 TRIB2Q92519 343 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 DDX11Q96FC9 970 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 RAVER2Q9HCJ3 691 aaKnown RBP19.17■□□□□ 0.66
SF3A1-209ENST00000496189 GPCPD1Q9NPB8 672 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 PNMA2Q9UL42 364 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 FRMPD2Q68DX3 1309 aaPredicted RBP19.17■□□□□ 0.66
SF3A1-209ENST00000496189 DOCK3Q8IZD9 2030 aa19.17■□□□□ 0.66
SF3A1-209ENST00000496189 HOXC6P09630 235 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 CHST13Q8NET6 341 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 ANKS1AQ92625 1134 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 UNC93B1Q9H1C4 597 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 PRR12Q9ULL5 1215 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 RPTORQ8N122 1335 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 RBBP6Q7Z6E9 1792 aaKnown RBP19.16■□□□□ 0.66
SF3A1-209ENST00000496189 ZNF236Q9UL36 1845 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 HTTP42858 3142 aa19.16■□□□□ 0.66
SF3A1-209ENST00000496189 POTEFA5A3E0 1075 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 GJB1P08034 283 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 ZNF543Q08ER8 600 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 WTAPQ15007 396 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 TKFCQ3LXA3 575 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 ASPRV1Q53RT3 343 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 SYDE2Q5VT97 1194 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 CCDC174Q6PII3 467 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 ANKRD35Q8N283 1001 aa19.15■□□□□ 0.66
SF3A1-209ENST00000496189 SLC27A2O14975 620 aa19.14■□□□□ 0.65
SF3A1-209ENST00000496189 DHX16O60231 1041 aaKnown RBP19.14■□□□□ 0.65
SF3A1-209ENST00000496189 PARP1P09874 1014 aaKnown RBP19.14■□□□□ 0.65
SF3A1-209ENST00000496189 PRKAR2AP13861 404 aaKnown RBP19.14■□□□□ 0.65
SF3A1-209ENST00000496189 CREB3L3Q68CJ9 461 aa19.14■□□□□ 0.65
SF3A1-209ENST00000496189 BTNL9Q6UXG8 535 aa19.14■□□□□ 0.65
SF3A1-209ENST00000496189 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.14■□□□□ 0.65
SF3A1-209ENST00000496189 ACAD9Q9H845 621 aa19.14■□□□□ 0.65
SF3A1-209ENST00000496189 HOMER2Q9NSB8 354 aa19.14■□□□□ 0.65
SF3A1-209ENST00000496189 SNHG28P0DPA3 235 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 MCM5P33992 734 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 SLC16A2P36021 539 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 KRT32Q14532 448 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 CCL14Q16627 93 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 TMEM67Q5HYA8 995 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 OLFML2BQ68BL8 750 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 CYB5R4Q7L1T6 521 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 CCPG1Q9ULG6 757 aa19.13■□□□□ 0.65
SF3A1-209ENST00000496189 EPB41L2O43491 1005 aaKnown RBP19.12■□□□□ 0.65
SF3A1-209ENST00000496189 TFRCP02786 760 aaKnown RBP19.12■□□□□ 0.65
SF3A1-209ENST00000496189 ALAS1P13196 640 aa19.12■□□□□ 0.65
SF3A1-209ENST00000496189 EN2P19622 333 aaPredicted RBP19.12■□□□□ 0.65
SF3A1-209ENST00000496189 GJA8P48165 433 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms