RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DACH1Q9UI36 760 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 MAD2L2Q9UI95 211 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 SYNRGQ9UMZ2 1314 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 ARHGAP6O43182 974 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 ZNF569Q5MCW4 686 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 COL24A1Q17RW2 1714 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 SBF2Q86WG5 1849 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 BTDP43251 543 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 ELOA2Q8IYF1 753 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 BLIDQ8IZY5 108 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 RPGRQ92834 1020 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 INF2Q27J81 1249 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 ZNF444Q8N0Y2 327 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 IGSF22Q8N9C0 903 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 WDR66Q8TBY9 1149 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 VAT1LQ9HCJ6 419 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 PHLPP2Q6ZVD8 1323 aa18.68■□□□□ 0.58
CCDC88B-210ENST00000494566 TBC1D8O95759 1140 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 KIF5BP33176 963 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 TBX2Q13207 712 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 PDS5AQ29RF7 1337 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 TMEM60Q9H2L4 133 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 KCND1Q9NSA2 647 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 PPP1R3GB7ZBB8 358 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 CASP14P31944 242 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 SMC1AQ14683 1233 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 TRIML1Q8N9V2 468 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 TMEM47Q9BQJ4 181 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 E2F4Q16254 413 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 CC2D1AQ6P1N0 951 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 ZNF804AQ7Z570 1209 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 BBXQ8WY36 941 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 TRIM10Q9UDY6 481 aa18.67■□□□□ 0.58
CCDC88B-210ENST00000494566 N4BP1O75113 896 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 ZRANB2O95218 330 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 RASA1P20936 1047 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 KIF4BQ2VIQ3 1234 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 RRAGBQ5VZM2 374 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 APTXQ7Z2E3 356 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 FNBP4Q8N3X1 1017 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 RTFDC1Q9BY42 306 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 GDAQ9Y2T3 454 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 F8W031 263 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 LMAN1P49257 510 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 NR1I3Q14994 352 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 USP17L2Q6R6M4 530 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 RASSF8Q8NHQ8 419 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 CD209Q9NNX6 404 aa18.66■□□□□ 0.58
CCDC88B-210ENST00000494566 ANKRD65E5RJM6 399 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 RNF225M0QZC1 329 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 BAG3O95817 575 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 PDXDC2PQ6P474 469 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 PPFIBP1Q86W92 1011 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 FAM53CQ9NYF3 392 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 LEMD3Q9Y2U8 911 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 IRX5P78411 483 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 SPATA1Q5VX52 437 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 CLEC10AQ8IUN9 316 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 TEX11Q8IYF3 940 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 IQUBQ8NA54 791 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 PLEKHA4Q9H4M7 779 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 PCDHA4Q9UN74 947 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 ZNF831Q5JPB2 1677 aa18.65■□□□□ 0.58
CCDC88B-210ENST00000494566 CCDC194A0A1B0GVG4 234 aa18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 EFCAB8A8MWE9 144 aa18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 ERCC3P19447 782 aa18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 ERCC5P28715 1186 aaPredicted RBP18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 DGKHQ86XP1 1220 aa18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 TAB2Q9NYJ8 693 aa18.64■□□□□ 0.58
CCDC88B-210ENST00000494566 H3BQF6 201 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 ENC1O14682 589 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 RIMBP2O15034 1052 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 BMP15O95972 392 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 FXR1P51114 621 aaKnown RBP eCLIP18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 EIF6P56537 245 aaKnown RBP18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 GRM4Q14833 912 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 C4orf32Q8N8J7 132 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 PCDHA6Q9UN73 950 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 PCDHA8Q9Y5H6 950 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 MRFAP1Q9Y605 127 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 TAF1LQ8IZX4 1826 aa18.64■□□□□ 0.57
CCDC88B-210ENST00000494566 A0A1B0GTH6 734 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 CCDC66A2RUB6 948 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 AKR1B15C9JRZ8 316 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 SLURP2P0DP57 97 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 PICALMQ13492 652 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 MFSD14BQ5SR56 506 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 AMOTL1Q8IY63 956 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 KIFC2Q96AC6 838 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 GSDMAQ96QA5 445 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 ARFGAP3Q9NP61 516 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 C6orf229H3BNL8 230 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 CDK8P49336 464 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 MAP3K9P80192 1104 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 EYA3Q99504 573 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 SLF1Q9BQI6 1058 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 UBA5Q9GZZ9 404 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 POLLQ9UGP5 575 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 MAST2Q6P0Q8 1798 aa18.63■□□□□ 0.57
CCDC88B-210ENST00000494566 TRIM49BA6NDI0 452 aa18.63■□□□□ 0.57
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