RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-211	ENST00000494333	DIEXF	Q68CQ4	756 aa	Known RBP	10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	CAPNS2	Q96L46	248 aa		10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	PUS3	Q9BZE2	481 aa	Known RBP	10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	BICC1	Q9H694	974 aa	Known RBP	10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	CD209	Q9NNX6	404 aa		10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	GGA3	Q9NZ52	723 aa		10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	NOB1	Q9ULX3	412 aa	Known RBP	10.13	□□□□□ -0.79
RIF1-211	ENST00000494333	FOXN1	O15353	648 aa		10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	FZD6	O60353	706 aa		10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	DNM1	Q05193	864 aa	Known RBP	10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	ZNF468	Q5VIY5	522 aa	Predicted RBP	10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	ANGEL2	Q5VTE6	544 aa	Known RBP	10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	C15orf52	Q6ZUT6	534 aa	Known RBP	10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	ACD	Q96AP0	544 aa		10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	OXCT2	Q9BYC2	517 aa	Predicted RBP	10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	C11orf16	Q9NQ32	467 aa		10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	CACNA1F	O60840	1977 aa		10.12	□□□□□ -0.79
RIF1-211	ENST00000494333	MYO3B	Q8WXR4	1341 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	XYLB	O75191	536 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	ARAF	P10398	606 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	MZF1	P28698	734 aa	Predicted RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	PCBP4	P57723	403 aa	Known RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	MAP2K1	Q02750	393 aa	Predicted RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	NBPF9	Q3BBW0	867 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	RABL6	Q3YEC7	729 aa	Predicted RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	ZNF804A	Q7Z570	1209 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	SYT9	Q86SS6	491 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	KIAA0825	Q8IV33	1275 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	C2orf69	Q8N8R5	385 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	BHMT	Q93088	406 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	HHIPL1	Q96JK4	782 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	GBA2	Q9HCG7	927 aa	Predicted RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	KLF15	Q9UIH9	416 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	HDAC9	Q9UKV0	1011 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	POLI	Q9UNA4	740 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	SCAF8	Q9UPN6	1271 aa	Known RBP	10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	RIPOR2	Q9Y4F9	1068 aa		10.11	□□□□□ -0.79
RIF1-211	ENST00000494333	IRS2	Q9Y4H2	1338 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	ZNF609	O15014	1411 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	WNT10B	O00744	389 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	AOC2	O75106	756 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	SASH3	O75995	380 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	PDGFA	P04085	211 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	MAP2K2	P36507	400 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	RARS	P54136	660 aa	Known RBP	10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	HUNK	P57058	714 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	UBE4A	Q14139	1066 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	LRRC24	Q50LG9	513 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	ANKRD44	Q8N8A2	993 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	KLHDC4	Q8TBB5	520 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	API5	Q9BZZ5	524 aa	Known RBP	10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	AVEN	Q9NQS1	362 aa	Predicted RBP	10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	BIN2	Q9UBW5	565 aa	Predicted RBP	10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	SCN9A	Q15858	1988 aa		10.1	□□□□□ -0.79
RIF1-211	ENST00000494333	MROH5	Q6ZUA9	1318 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	MYH3	P11055	1940 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	SASH1	O94885	1247 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	IL1R1	P14778	569 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	HIBADH	P31937	336 aa	Known RBP	10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	GYG1	P46976	350 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	CTCF	P49711	727 aa	Predicted RBP	10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	MMP14	P50281	582 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	KRT25	Q7Z3Z0	450 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	WHAMM	Q8TF30	809 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	CDCA5	Q96FF9	252 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	FAM84B	Q96KN1	310 aa	Predicted RBP	10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	PNMA5	Q96PV4	448 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	JAG2	Q9Y219	1238 aa		10.09	□□□□□ -0.79
RIF1-211	ENST00000494333	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.09	□□□□□ -0.79
RIF1-211	ENST00000494333		F8W031	263 aa	Predicted RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	UBTFL1	P0CB47	393 aa	Predicted RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	NFKB1	P19838	968 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	LOR	P23490	312 aa	Predicted RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	TARS	P26639	723 aa	Known RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	ADH6	P28332	368 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	LBX1	P52954	281 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	METTL24	Q5JXM2	366 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	PRAMEF18	Q5VWM3	479 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	RGMB	Q6NW40	437 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	LYPD4	Q6UWN0	246 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	CERS5	Q8N5B7	392 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	EFCC1	Q9HA90	598 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	ZFAT	Q9P243	1243 aa		10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	GDF2	Q9UK05	429 aa	Predicted RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	FNDC3A	Q9Y2H6	1198 aa	Known RBP	10.08	□□□□□ -0.8
RIF1-211	ENST00000494333	PITPNM2	Q9BZ72	1349 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	PDE8B	O95263	885 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	PCSK2	P16519	638 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	DLGAP5	Q15398	846 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	VPS37D	Q86XT2	251 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	GOLGA6L1	Q8N7Z2	621 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	TDRD7	Q8NHU6	1098 aa	Known RBP	10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	ARHGAP45	Q92619	1136 aa		10.07	□□□□□ -0.8
RIF1-211	ENST00000494333	SPEF2	Q9C093	1822 aa		10.06	□□□□□ -0.8
RIF1-211	ENST00000494333	EYA2	O00167	538 aa		10.06	□□□□□ -0.8
RIF1-211	ENST00000494333	IPO8	O15397	1037 aa	Known RBP	10.06	□□□□□ -0.8
RIF1-211	ENST00000494333	FRAT2	O75474	233 aa	Predicted RBP	10.06	□□□□□ -0.8
RIF1-211	ENST00000494333	BCAR3	O75815	825 aa		10.06	□□□□□ -0.8
RIF1-211	ENST00000494333	RPLP1	P05386	114 aa	Known RBP	10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms