RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CABP7Q86V35 215 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 CALCRLQ16602 461 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 SLC35F6Q8N357 371 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 POLR3EQ9NVU0 708 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 TBC1D7Q9P0N9 293 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 SOS2Q07890 1332 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 POTEJP0CG39 1038 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 LZTS2Q9BRK4 669 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 MAP2P11137 1827 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 HS2ST1Q7LGA3 356 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 CELF1Q92879 486 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 GJA3Q9Y6H8 435 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 DIP2BQ9P265 1576 aa18.13■□□□□ 0.49
CCDC88B-209ENST00000494080 TLDC2A0PJX2 215 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 RNF40O75150 1001 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 CCDC65Q8IXS2 484 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 ANKS4BQ8N8V4 417 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 DYNLL2Q96FJ2 89 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 RSRC1Q96IZ7 334 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 PPIP5K2O43314 1243 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 IFNAR1P17181 557 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 RNASE9P60153 205 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 DCAF17Q5H9S7 520 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 TTC19Q6DKK2 380 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 CCDC174Q6PII3 467 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 CAPS2Q9BXY5 557 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 COL3A1P02461 1466 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 ATP1A2P50993 1020 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 MECOMQ03112 1051 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 TRIM14Q14142 442 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 EFCAB13Q8IY85 973 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 CPXCR1Q8N123 301 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 TRPC5Q9UL62 973 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 LEMD3Q9Y2U8 911 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 MROH1Q8NDA8 1641 aa18.12■□□□□ 0.49
CCDC88B-209ENST00000494080 IKBKBO14920 756 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 FMNL1O95466 1100 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 PRDX5P30044 214 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 TRIM28Q13263 835 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 NELFBQ8WX92 580 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 RNF26Q9BY78 433 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 SPATA31D1Q6ZQQ2 1576 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 TRIM66O15016 1216 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 HERC4Q5GLZ8 1057 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 CABS1Q96KC9 395 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 BSDC1Q9NW68 430 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 SEMA3EO15041 775 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 CFBP00751 764 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 TECP42680 631 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 CNNM4Q6P4Q7 775 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 STOX1Q6ZVD7 989 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 CSRNP2Q9H175 543 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 TAF6LQ9Y6J9 622 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 RPAP1Q9BWH6 1393 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 ANKRD62A6NC57 917 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 A6NNZ2 444 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 ZMYND10O75800 440 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 KRT13P13646 458 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 TUBB8Q3ZCM7 444 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 NCAPH2Q6IBW4 605 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 CLEC4GQ6UXB4 293 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 SYMPKQ92797 1274 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 SELENOSQ9BQE4 189 aa18.11■□□□□ 0.49
CCDC88B-209ENST00000494080 A0A087WUV0 522 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 SMIM23A6NLE4 172 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 DDAH1O94760 285 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 MAGEA9P43362 315 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 CTNNBL1Q8WYA6 563 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 ABCB6Q9NP58 842 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 THRAP3Q9Y2W1 955 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 CDC25AP30304 524 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 LIFRP42702 1097 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 GRAMD1CQ8IYS0 662 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 GSTTP1A0A1W2PQM5 241 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 COBLO75128 1261 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 CASP8Q14790 479 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 ARHGEF10LQ9HCE6 1279 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 MINPP1Q9UNW1 487 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 CYB5R4Q7L1T6 521 aa18.1■□□□□ 0.49
CCDC88B-209ENST00000494080 SF3A3Q12874 501 aaKnown RBP eCLIP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 NELFCDQ8IXH7 590 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 OSBPL5Q9H0X9 879 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 EIF3CLB5ME19 914 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 PDE6BP35913 854 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 SECISBP2LQ93073 1101 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 EIF3CQ99613 913 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 CDHR2Q9BYE9 1310 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 POLD1P28340 1107 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 VSTM4Q8IW00 320 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 FOXP1Q9H334 677 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 RIPOR2Q9Y4F9 1068 aa18.09■□□□□ 0.49
CCDC88B-209ENST00000494080 ENC1O14682 589 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 RAPGEF1Q13905 1077 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 RPS6KA4O75676 772 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 C2CD5Q86YS7 1000 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 SEPT12Q8IYM1 358 aa18.08■□□□□ 0.49
CCDC88B-209ENST00000494080 NLGN1Q8N2Q7 840 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms