RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 FAM160B2Q86V87 743 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 ADGRF4Q8IZF3 695 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 RGS22Q8NE09 1264 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 PIBF1Q8WXW3 757 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 MTMR8Q96EF0 704 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 SLC10A4Q96EP9 437 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 C8orf76Q96K31 380 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 PIGSQ96S52 555 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 JMJD4Q9H9V9 463 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 TMOD4Q9NZQ9 345 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 FEM1BQ9UK73 627 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 KCNH4Q9UQ05 1017 aa13.19□□□□□ -0.3
MCF2L-231ENST00000494043 WDR33Q9C0J8 1336 aaKnown RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 A0A0G2JLL6 359 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 VPS37CA5D8V6 355 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 H3BQV1 296 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 IRF6O14896 467 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 TOMM70O94826 608 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 GJA5P36382 358 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 IFFO2Q5TF58 517 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 PRRT2Q7Z6L0 340 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 HOMER1Q86YM7 354 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 ZNF784Q8NCA9 323 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 CHURC1Q8WUH1 139 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 WNK4Q96J92 1243 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 RPAP3Q9H6T3 665 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 VAT1LQ9HCJ6 419 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 SEC63Q9UGP8 760 aaKnown RBP13.18□□□□□ -0.3
MCF2L-231ENST00000494043 MTMR6Q9Y217 621 aa13.18□□□□□ -0.3
MCF2L-231ENST00000494043 LOC285556D6RIA3 1793 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 ZBTB5O15062 677 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 HUNKP57058 714 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 TRIM29Q14134 588 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 PROCA1Q8NCQ7 364 aaPredicted RBP13.17□□□□□ -0.3
MCF2L-231ENST00000494043 FBXO18Q8NFZ0 1043 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 SLF1Q9BQI6 1058 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 TANGO6Q9C0B7 1094 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 GJB4Q9NTQ9 266 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 PRR12Q9ULL5 1215 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 ZDHHC9Q9Y397 364 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 PTPRFP10586 1907 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 MYH6P13533 1939 aa13.17□□□□□ -0.3
MCF2L-231ENST00000494043 BAZ2BQ9UIF8 2168 aaKnown RBP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 PNMA6FA0A0J9YX94 578 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 hCG_1984214I3L0E3 225 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 STXBP3O00186 592 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 ZSCAN22P10073 491 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 XBP1P17861 261 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 GUCY1B3Q02153 619 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 FSTL1Q12841 308 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 CDC37Q16543 378 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 KRT40Q6A162 431 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 WWC2Q6AWC2 1192 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 OTUD7BQ6GQQ9 843 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 HEATR3Q7Z4Q2 680 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 FAM177A1Q8N128 213 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 ZNF713Q8N859 430 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 GPKOWQ92917 476 aaPredicted RBP eCLIP13.16□□□□□ -0.3
MCF2L-231ENST00000494043 KIFC2Q96AC6 838 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 SHISA4Q96DD7 197 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 SH3GLB2Q9NR46 395 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 FBXO28Q9NVF7 368 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 BARHL2Q9NY43 387 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 VPS54Q9P1Q0 977 aa13.16□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L15C9J2P7 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L13C9JLJ4 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L11C9JVI0 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L18D6R9N7 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L22D6RA61 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L17D6RBQ6 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L19D6RCP7 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L20D6RJB6 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 PPP1R11O60927 126 aaPredicted RBP13.15□□□□□ -0.3
MCF2L-231ENST00000494043 FLOT1O75955 427 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 F13A1P00488 732 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 USP17L24Q0WX57 530 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 SNAPC2Q13487 334 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 MOGSQ13724 837 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 QRICH1Q2TAL8 776 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 FOXD4L5Q5VV16 416 aaPredicted RBP13.15□□□□□ -0.3
MCF2L-231ENST00000494043 GADL1Q6ZQY3 521 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 PRPF38AQ8NAV1 312 aaKnown RBP13.15□□□□□ -0.3
MCF2L-231ENST00000494043 FOXD4L4Q8WXT5 416 aaPredicted RBP13.15□□□□□ -0.3
MCF2L-231ENST00000494043 RANBP17Q9H2T7 1088 aaKnown RBP13.15□□□□□ -0.3
MCF2L-231ENST00000494043 PPP1R9AQ9ULJ8 1098 aa13.15□□□□□ -0.3
MCF2L-231ENST00000494043 MMP1P03956 469 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 ZBTB48P10074 688 aaPredicted RBP13.14□□□□□ -0.31
MCF2L-231ENST00000494043 SNAP25P60880 206 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 TREML2Q5T2D2 321 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 SPRYD7Q5W111 196 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 TYW1BQ6NUM6 668 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 PPP1R18Q6NYC8 613 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 SAMD1Q6SPF0 538 aaPredicted RBP13.14□□□□□ -0.31
MCF2L-231ENST00000494043 CATSPERGQ6ZRH7 1159 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 FASTKD5Q7L8L6 764 aaKnown RBP13.14□□□□□ -0.31
MCF2L-231ENST00000494043 SAPCD2Q86UD0 394 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 CCDC148Q8NFR7 591 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 CCDC12Q8WUD4 166 aaPredicted RBP13.14□□□□□ -0.31
MCF2L-231ENST00000494043 PHF20Q9BVI0 1012 aa13.14□□□□□ -0.31
MCF2L-231ENST00000494043 KCNJ14Q9UNX9 436 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms