RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 GOLGB1Q14789 3259 aaKnown RBP11.13□□□□□ -0.63
USP54-214ENST00000492357 PTPRFP10586 1907 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 MYH15Q9Y2K3 1946 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 DDX11L8A8MPP1 907 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 ECE1P42892 770 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 TRAPPC10P48553 1259 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 OAZ1P54368 228 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 KIF23Q02241 960 aaPredicted RBP11.12□□□□□ -0.63
USP54-214ENST00000492357 PABPC4Q13310 644 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP54-214ENST00000492357 ORC2Q13416 577 aaPredicted RBP11.12□□□□□ -0.63
USP54-214ENST00000492357 VGLL4Q14135 290 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 SYDE2Q5VT97 1194 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 RAB11FIP4Q86YS3 637 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 CLEC10AQ8IUN9 316 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 ADGRF4Q8IZF3 695 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 C2orf69Q8N8R5 385 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 ACER1Q8TDN7 264 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 ZKSCAN4Q969J2 545 aaPredicted RBP11.12□□□□□ -0.63
USP54-214ENST00000492357 ZNF396Q96N95 335 aaPredicted RBP11.12□□□□□ -0.63
USP54-214ENST00000492357 AMNQ9BXJ7 453 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 SCAND2PQ9GZW5 306 aaPredicted RBP11.12□□□□□ -0.63
USP54-214ENST00000492357 ZMYND12Q9H0C1 365 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 JMJD4Q9H9V9 463 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 C6orf50Q9HD87 102 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 TMOD4Q9NZQ9 345 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 ZHX2Q9Y6X8 837 aa11.12□□□□□ -0.63
USP54-214ENST00000492357 TMEM232C9JQI7 657 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 SLURP2P0DP57 97 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 ZBTB48P10074 688 aaPredicted RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 KRT85P78386 507 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 SPP2Q13103 211 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 RESTQ13127 1097 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 RILPL1Q5EBL4 403 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 FASTKD5Q7L8L6 764 aaKnown RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 TMEM87AQ8NBN3 555 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 GTF3C2Q8WUA4 911 aaPredicted RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 RANBP17Q9H2T7 1088 aaKnown RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 GBA2Q9HCG7 927 aaPredicted RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 MAP3K20Q9NYL2 800 aaKnown RBP11.11□□□□□ -0.63
USP54-214ENST00000492357 SLC45A1Q9Y2W3 748 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 PARP14Q460N5 1801 aa11.11□□□□□ -0.63
USP54-214ENST00000492357 ELP1O95163 1332 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 A0A0G2JLL6 359 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L15C9J2P7 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L13C9JLJ4 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L11C9JVI0 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L18D6R9N7 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L22D6RA61 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L17D6RBQ6 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L19D6RCP7 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L20D6RJB6 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 STXBP3O00186 592 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 ATP2A1O14983 1001 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 BAG4O95429 457 aaKnown RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 ITGBL1O95965 494 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 BMP15O95972 392 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 GOLGA8HP0CJ92 632 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 VCAM1P19320 739 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 HOXA7P31268 230 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 KRT2P35908 639 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 MRPL12P52815 198 aaKnown RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 USP17L24Q0WX57 530 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 MTMR2Q13614 643 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 GNL2Q13823 731 aaKnown RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 TTLL12Q14166 644 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 SHROOM1Q2M3G4 852 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 PRAMEF18Q5VWM3 479 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 MAP1SQ66K74 1059 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 LBX2Q6XYB7 198 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 KCTD1Q719H9 257 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 PRRT2Q7Z6L0 340 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 NOSTRINQ8IVI9 506 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 DIS3L2Q8IYB7 885 aaKnown RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 CCDC82Q8N4S0 544 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 MB21D1Q8N884 522 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 HHIPL1Q96JK4 782 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 PIGSQ96S52 555 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 SLF1Q9BQI6 1058 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 GPBP1L1Q9HC44 474 aaPredicted RBP11.1□□□□□ -0.63
USP54-214ENST00000492357 GPCPD1Q9NPB8 672 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 NMRK2Q9NPI5 230 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 EMILIN3Q9NT22 766 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 HOXC10Q9NYD6 342 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 PRR12Q9ULL5 1215 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 PCDHA4Q9UN74 947 aa11.1□□□□□ -0.63
USP54-214ENST00000492357 FRMPD2Q68DX3 1309 aaPredicted RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 FOSP01100 380 aaPredicted RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 NAPAP54920 295 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 NLRP5P59047 1200 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 GHRHRQ02643 423 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 IKQ13123 557 aaPredicted RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 PKP1Q13835 747 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 CDC37Q16543 378 aaPredicted RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 SLC35G1Q2M3R5 365 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 FAM83BQ5T0W9 1011 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 MYSM1Q5VVJ2 828 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 WWC2Q6AWC2 1192 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 KRT25Q7Z3Z0 450 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 FBXO11Q86XK2 927 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 SMC1BQ8NDV3 1235 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms