RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 AGBL1Q96MI9 1066 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 CNTNAP3BQ96NU0 1288 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 PRRX2Q99811 253 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 CNTNAP3Q9BZ76 1288 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 RPAP3Q9H6T3 665 aaPredicted RBP9.04□□□□□ -0.96
COL9A1-209ENST00000489861 GINM1Q9NU53 330 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 FAM208BQ5VWN6 2430 aa9.04□□□□□ -0.96
COL9A1-209ENST00000489861 LCHNA4D1U4 455 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 PROB1E7EW31 1015 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 SEMA3EO15041 775 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 RASGRF1Q13972 1273 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 ATG9AQ7Z3C6 839 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 ADHFE1Q8IWW8 467 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 TEX11Q8IYF3 940 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 RPUSD2Q8IZ73 545 aaKnown RBP9.03□□□□□ -0.96
COL9A1-209ENST00000489861 ZGPATQ8N5A5 531 aaKnown RBP9.03□□□□□ -0.96
COL9A1-209ENST00000489861 EDAQ92838 391 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 ATOH1Q92858 354 aaPredicted RBP9.03□□□□□ -0.96
COL9A1-209ENST00000489861 PBXIP1Q96AQ6 731 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 FEZ1Q99689 392 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 KIAA1683Q9H0B3 1180 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 SUGCTQ9HAC7 445 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 GNL3LQ9NVN8 582 aaKnown RBP9.03□□□□□ -0.96
COL9A1-209ENST00000489861 ATG2AQ2TAZ0 1938 aa9.03□□□□□ -0.96
COL9A1-209ENST00000489861 MYO5AQ9Y4I1 1855 aaKnown RBP9.02□□□□□ -0.96
COL9A1-209ENST00000489861 PRR23AA6NEV1 266 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 EYA2O00167 538 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 CTAGE5O15320 804 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 C6orf222P0C671 652 aaPredicted RBP9.02□□□□□ -0.97
COL9A1-209ENST00000489861 FCER1AP12319 257 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 ADORA1P30542 326 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 VCPP55072 806 aaKnown RBP9.02□□□□□ -0.97
COL9A1-209ENST00000489861 POLA2Q14181 598 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 ATP2B3Q16720 1220 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 CCDC27Q2M243 656 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 ZNF792Q3KQV3 632 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 PUS10Q3MIT2 529 aaKnown RBP9.02□□□□□ -0.97
COL9A1-209ENST00000489861 DEFB128Q7Z7B8 93 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 NCAPG2Q86XI2 1143 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 FOXP4Q8IVH2 680 aaPredicted RBP9.02□□□□□ -0.97
COL9A1-209ENST00000489861 HERC6Q8IVU3 1022 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 SLC43A3Q8NBI5 491 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 SH3RF3Q8TEJ3 882 aaPredicted RBP9.02□□□□□ -0.97
COL9A1-209ENST00000489861 TRPV6Q9H1D0 765 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 MROH8Q9H579 483 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 PRKAG3Q9UGI9 489 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 TRPC6Q9Y210 931 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 GRIN2DO15399 1336 aa9.02□□□□□ -0.97
COL9A1-209ENST00000489861 TMEM221A6NGB7 291 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 H0Y858 1186 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 M0R296 226 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 ZBTB22O15209 634 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 ANP32CO43423 234 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 B4GALT4O60513 344 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 DUSP11O75319 330 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 ALDH1L1O75891 902 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 MAP4K4O95819 1239 aaPredicted RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 SNAI1O95863 264 aaPredicted RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 RFX5P48382 616 aaPredicted RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 USP14P54578 494 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 PLS1Q14651 629 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 COG2Q14746 738 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 CCDC102BQ68D86 513 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 TRIM67Q6ZTA4 783 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 RNF135Q8IUD6 432 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 PCSK9Q8NBP7 692 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 NSUN4Q96CB9 384 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 SLC9A7Q96T83 725 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 UPF3BQ9BZI7 483 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 UPF3AQ9H1J1 476 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 DHX36Q9H2U1 1008 aaKnown RBP9.01□□□□□ -0.97
COL9A1-209ENST00000489861 TLR9Q9NR96 1032 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 MTUS1Q9ULD2 1270 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 FAM184BQ9ULE4 1060 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 PALD1Q9ULE6 856 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 GPR179Q6PRD1 2367 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 IL16Q14005 1332 aa9.01□□□□□ -0.97
COL9A1-209ENST00000489861 SETXQ7Z333 2677 aaKnown RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 TANC1Q9C0D5 1861 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 GJA9P57773 515 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 BEX3Q00994 111 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 GNASQ5JWF2 1037 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 SPTY2D1Q68D10 685 aaPredicted RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 ERICH6Q7L0X2 663 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 TMCO2Q7Z6W1 182 aaPredicted RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 MAPKAPK5Q8IW41 473 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 SUGP1Q8IWZ8 645 aaKnown RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 CRACR2BQ8N4Y2 399 aaPredicted RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 FBXL6Q8N531 539 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 PHOSPHO2Q8TCD6 241 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 FSD1Q9BTV5 496 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 SRCIN1Q9C0H9 1055 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 HOXC10Q9NYD6 342 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 CNPY2Q9Y2B0 182 aa9□□□□□ -0.97
COL9A1-209ENST00000489861 DIS3Q9Y2L1 958 aaKnown RBP9□□□□□ -0.97
COL9A1-209ENST00000489861 ZNF316A6NFI3 1004 aaPredicted RBP8.99□□□□□ -0.97
COL9A1-209ENST00000489861 RAB3GAP1Q15042 981 aa8.99□□□□□ -0.97
COL9A1-209ENST00000489861 PKN1Q16512 942 aa8.99□□□□□ -0.97
COL9A1-209ENST00000489861 KIAA1755Q5JYT7 1200 aa8.99□□□□□ -0.97
COL9A1-209ENST00000489861 SLC4A10Q6U841 1118 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms