RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	SH2B1	Q9NRF2	756 aa	Predicted RBP	6.61	□□□□□ -1.35
ATG4A-208	ENST00000489247	LIMCH1	Q9UPQ0	1083 aa		6.61	□□□□□ -1.35
ATG4A-208	ENST00000489247	MYH14	Q7Z406	1995 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	NUP98	P52948	1817 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	LY75	O60449	1722 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	COL24A1	Q17RW2	1714 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	KRBA1	A5PL33	1030 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	SHISA8	B8ZZ34	492 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	GOLIM4	O00461	696 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	IGSF3	O75054	1194 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	UQCRFS1P1	P0C7P4	283 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ARAF	P10398	606 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ADORA1	P30542	326 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ARSD	P51689	593 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ARHGAP4	P98171	946 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	NOM1	Q5C9Z4	860 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	TAF7L	Q5H9L4	462 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ZNF468	Q5VIY5	522 aa	Predicted RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	PRPF40B	Q6NWY9	871 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	DDX46	Q7L014	1031 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	RUFY3	Q7L099	469 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ATCAY	Q86WG3	371 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	RGL4	Q8IZJ4	473 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	EDC3	Q96F86	508 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ZSCAN31	Q96LW9	406 aa	Predicted RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	NEUROD6	Q96NK8	337 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	CDC5L	Q99459	802 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	DNAJC2	Q99543	621 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	NYX	Q9GZU5	481 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	CNNM1	Q9NRU3	951 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	STIM2	Q9P246	746 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	NIP7	Q9Y221	180 aa	Known RBP eCLIP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	RTCB	Q9Y3I0	505 aa	Known RBP	6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	CYP46A1	Q9Y6A2	500 aa		6.6	□□□□□ -1.35
ATG4A-208	ENST00000489247	ZNF804B	A4D1E1	1349 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	MAST3	O60307	1309 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	ZMYM6	O95789	1325 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	PDS5A	Q29RF7	1337 aa	Known RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	OIP5	O43482	229 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	HSP90AA1	P07900	732 aa	Known RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	RPS6KB1	P23443	525 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	ITGB7	P26010	798 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	AK2	P54819	239 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	ANKRD1	Q15327	319 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	TTF1	Q15361	905 aa	Predicted RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	UBE3C	Q15386	1083 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	ADCK5	Q3MIX3	580 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	TTC39A	Q5SRH9	613 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	TMED8	Q6PL24	325 aa	Predicted RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	PTF1A	Q7RTS3	328 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	KRT25	Q7Z3Z0	450 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	GOLGA6L1	Q8N7Z2	621 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	APPBP2	Q92624	585 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	BHMT	Q93088	406 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	AGXT2	Q9BYV1	514 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	UPF3B	Q9BZI7	483 aa	Known RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	GSX2	Q9BZM3	304 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	BSDC1	Q9NW68	430 aa	Predicted RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	CCNL1	Q9UK58	526 aa	Predicted RBP	6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	ZDHHC9	Q9Y397	364 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	BTAF1	O14981	1849 aa		6.59	□□□□□ -1.35
ATG4A-208	ENST00000489247	DDX60	Q8IY21	1712 aa	Known RBP	6.59	□□□□□ -1.36
ATG4A-208	ENST00000489247	ARAP2	Q8WZ64	1704 aa		6.59	□□□□□ -1.36
ATG4A-208	ENST00000489247	FOXP2	O15409	715 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	HMGB1	P09429	215 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	SLC5A1	P13866	664 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	HCLS1	P14317	486 aa	Predicted RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	CAST	P20810	708 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	ADH6	P28332	368 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	ADD2	P35612	726 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	IGHMBP2	P38935	993 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	MCAM	P43121	646 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	ZAP70	P43403	619 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	SKOR2	Q2VWA4	1001 aa	Predicted RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	MEX3C	Q5U5Q3	659 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	ZSCAN25	Q6NSZ9	544 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	SLCO4C1	Q6ZQN7	724 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	FAM196A	Q6ZSG2	479 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	CMTR1	Q8N1G2	835 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	ZGPAT	Q8N5A5	531 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	NEDD1	Q8NHV4	660 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	EDARADD	Q8WWZ3	215 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	OSBP2	Q969R2	916 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	JAKMIP1	Q96N16	626 aa	Known RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	PDRG1	Q9NUG6	133 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	GDF2	Q9UK05	429 aa	Predicted RBP	6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	KCNMB2	Q9Y691	235 aa		6.58	□□□□□ -1.36
ATG4A-208	ENST00000489247	CARMIL3	Q8ND23	1372 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	WDR19	Q8NEZ3	1342 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	C4B	P0C0L5	1744 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	AK9	Q5TCS8	1911 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	TCRBV5S4A2T	A0A5A2	114 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	SASH3	O75995	380 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	FAM13A	O94988	1023 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	BAG4	O95429	457 aa	Known RBP	6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	CYP21A2	P08686	494 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	HSPD1	P10809	573 aa	Known RBP	6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	EPX	P11678	715 aa		6.57	□□□□□ -1.36
ATG4A-208	ENST00000489247	NPR3	P17342	541 aa		6.57	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms