RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LRIT3	Q3SXY7	679 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	ZNF598	Q86UK7	904 aa	Known RBP	10.55	□□□□□ -0.72
USP4-213	ENST00000488520	AACS	Q86V21	672 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	MAPKAPK5	Q8IW41	473 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	CCAR1	Q8IX12	1150 aa	Known RBP	10.55	□□□□□ -0.72
USP4-213	ENST00000488520	GPRC5A	Q8NFJ5	357 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	TGFBRAP1	Q8WUH2	860 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	NOL10	Q9BSC4	688 aa	Known RBP	10.55	□□□□□ -0.72
USP4-213	ENST00000488520	PORCN	Q9H237	461 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	IL1RAPL2	Q9NP60	686 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	SNRK	Q9NRH2	765 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.55	□□□□□ -0.72
USP4-213	ENST00000488520	LRP2BP	Q9P2M1	347 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	PI4KB	Q9UBF8	816 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	STXBP5L	Q9Y2K9	1186 aa		10.55	□□□□□ -0.72
USP4-213	ENST00000488520	GFRA3	O60609	400 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	ZKSCAN1	P17029	563 aa	Predicted RBP	10.54	□□□□□ -0.72
USP4-213	ENST00000488520	MCAM	P43121	646 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	RPIA	P49247	311 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	BACE1	P56817	501 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	TNNI3K	Q59H18	835 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	TTC39A	Q5SRH9	613 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	MAP3K21	Q5TCX8	1036 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.54	□□□□□ -0.72
USP4-213	ENST00000488520	FAM161B	Q96MY7	647 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	WDR18	Q9BV38	432 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.54	□□□□□ -0.72
USP4-213	ENST00000488520	CWC22	Q9HCG8	908 aa	Known RBP	10.54	□□□□□ -0.72
USP4-213	ENST00000488520	RBPJL	Q9UBG7	517 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	HERC5	Q9UII4	1024 aa	Known RBP	10.54	□□□□□ -0.72
USP4-213	ENST00000488520	NDUFB9	Q9Y6M9	179 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	FPGT-TNNI3K	V9GXZ4	949 aa		10.54	□□□□□ -0.72
USP4-213	ENST00000488520	MYH7	P12883	1935 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	USP17L10	C9JJH3	530 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	ASNS	P08243	561 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	UQCRFS1P1	P0C7P4	283 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	XRCC5	P13010	732 aa	Known RBP	10.53	□□□□□ -0.72
USP4-213	ENST00000488520	JUND	P17535	347 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	HOXA7	P31268	230 aa	Predicted RBP	10.53	□□□□□ -0.72
USP4-213	ENST00000488520	ERVK-9	P63128	1117 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	ERVK-24	P63145	666 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	ZYX	Q15942	572 aa	Known RBP	10.53	□□□□□ -0.72
USP4-213	ENST00000488520	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.53	□□□□□ -0.72
USP4-213	ENST00000488520	GPR142	Q7Z601	462 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	SOCS4	Q8WXH5	440 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	TRIM34	Q9BYJ4	488 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	DNAJC18	Q9H819	358 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	SAP30BP	Q9UHR5	308 aa	Known RBP	10.53	□□□□□ -0.72
USP4-213	ENST00000488520	PALD1	Q9ULE6	856 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	MCM3AP	O60318	1980 aa		10.53	□□□□□ -0.72
USP4-213	ENST00000488520	C19orf81	C9J6K1	198 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	SMARCA5	O60264	1052 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	MAP4K4	O95819	1239 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	COL6A1	P12109	1028 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	ARID4A	P29374	1257 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	MAPK4	P31152	587 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	RGS2	P41220	211 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	ZNF697	Q5TEC3	545 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	WDR78	Q5VTH9	848 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	NAA16	Q6N069	864 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	PLEKHH3	Q7Z736	793 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	DHX36	Q9H2U1	1008 aa	Known RBP	10.52	□□□□□ -0.73
USP4-213	ENST00000488520	GBF1	Q92538	1859 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	FLT1	P17948	1338 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	VCAN	P13611	3396 aa		10.52	□□□□□ -0.73
USP4-213	ENST00000488520	NRG2	O14511	850 aa	Predicted RBP	10.51	□□□□□ -0.73
USP4-213	ENST00000488520	SPTLC1	O15269	473 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	BAG3	O95817	575 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	CNGA1	P29973	690 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	DYNLL1	P63167	89 aa	Known RBP	10.51	□□□□□ -0.73
USP4-213	ENST00000488520	ADGRA1	Q86SQ6	560 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	CHD1L	Q86WJ1	897 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	SMC5	Q8IY18	1101 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	TRMT44	Q8IYL2	757 aa	Known RBP	10.51	□□□□□ -0.73
USP4-213	ENST00000488520	USP6NL	Q92738	828 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	EAF2	Q96CJ1	260 aa	Predicted RBP	10.51	□□□□□ -0.73
USP4-213	ENST00000488520	FLRT1	Q9NZU1	646 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	ZBTB21	Q9ULJ3	1066 aa		10.51	□□□□□ -0.73
USP4-213	ENST00000488520	CDH23	Q9H251	3354 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	ERC2	O15083	957 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	ZBTB24	O43167	697 aa	Predicted RBP	10.5	□□□□□ -0.73
USP4-213	ENST00000488520	GH2	P01242	217 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	NUCB1	Q02818	461 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	USP17L2	Q6R6M4	530 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.5	□□□□□ -0.73
USP4-213	ENST00000488520	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
USP4-213	ENST00000488520	EDC3	Q96F86	508 aa	Known RBP	10.5	□□□□□ -0.73
USP4-213	ENST00000488520	GUCD1	Q96NT3	240 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	APBA2	Q99767	749 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.5	□□□□□ -0.73
USP4-213	ENST00000488520	DBNDD2	Q9BQY9	259 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	LNPK	Q9C0E8	428 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520		A0A0G2JMZ2	1700 aa		10.5	□□□□□ -0.73
USP4-213	ENST00000488520	ZNF236	Q9UL36	1845 aa		10.49	□□□□□ -0.73
USP4-213	ENST00000488520	CNMD	O75829	334 aa		10.49	□□□□□ -0.73
USP4-213	ENST00000488520	CYP2E1	P05181	493 aa	Predicted RBP	10.49	□□□□□ -0.73
USP4-213	ENST00000488520	MYSM1	Q5VVJ2	828 aa		10.49	□□□□□ -0.73
USP4-213	ENST00000488520	FEZ1	Q99689	392 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms