RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 IVNS1ABPQ9Y6Y0 642 aa6.6□□□□□ -1.35
SMC4-220ENST00000488017 FADS2P1A8MWK0 482 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 ZXDAP98168 799 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 BBS9Q3SYG4 887 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 PWWP2AQ96N64 755 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 BDH2Q9BUT1 245 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.59□□□□□ -1.35
SMC4-220ENST00000488017 CNOT11Q9UKZ1 510 aaKnown RBP6.59□□□□□ -1.35
SMC4-220ENST00000488017 PCDHA5Q9Y5H7 936 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 TAF6LQ9Y6J9 622 aa6.59□□□□□ -1.35
SMC4-220ENST00000488017 DNAJA2O60884 412 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 PF4P02776 101 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 SYPP08247 313 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 KCNA1Q09470 495 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 MLECQ14165 292 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 CBX2Q14781 532 aaPredicted RBP6.58□□□□□ -1.36
SMC4-220ENST00000488017 NBPF9Q3BBW0 867 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 HSF5Q4G112 596 aaPredicted RBP6.58□□□□□ -1.36
SMC4-220ENST00000488017 TMC6Q7Z403 805 aa6.58□□□□□ -1.36
SMC4-220ENST00000488017 USP31Q70CQ4 1352 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 GRIN3BO60391 1043 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 FKTNO75072 461 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 TNFRSF1AP19438 455 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 MPP2Q14168 576 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 TMC3Q7Z5M5 1100 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 TP53I13Q8NBR0 393 aaPredicted RBP6.57□□□□□ -1.36
SMC4-220ENST00000488017 RHOVQ96L33 236 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 RNF19AQ9NV58 838 aa6.57□□□□□ -1.36
SMC4-220ENST00000488017 UBOX5O94941 541 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 RAD51AP2Q09MP3 1159 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 RAB3GAP1Q15042 981 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 EAPPQ56P03 285 aaPredicted RBP6.56□□□□□ -1.36
SMC4-220ENST00000488017 ZFYVE27Q5T4F4 411 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 NBPF12Q5TAG4 269 aaPredicted RBP6.56□□□□□ -1.36
SMC4-220ENST00000488017 ZPBP2Q6X784 338 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 NLGN1Q8N2Q7 840 aa6.56□□□□□ -1.36
SMC4-220ENST00000488017 A0A1W2PQ45 241 aaPredicted RBP6.55□□□□□ -1.36
SMC4-220ENST00000488017 A0A1W2PQY0 241 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 SIGLEC6O43699 453 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 BUB1BO60566 1050 aaPredicted RBP6.55□□□□□ -1.36
SMC4-220ENST00000488017 KCNC1P48547 511 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 DAB2P98082 770 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 REC114Q7Z4M0 266 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 SLCO6A1Q86UG4 719 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 RELL1Q8IUW5 271 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 TMEM74Q96NL1 305 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 RSRP1Q9BUV0 290 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 TNFRSF12AQ9NP84 129 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 ACSL6Q9UKU0 697 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 PALD1Q9ULE6 856 aa6.55□□□□□ -1.36
SMC4-220ENST00000488017 GPR55Q9Y2T6 319 aaPredicted RBP6.55□□□□□ -1.36
SMC4-220ENST00000488017 IRS2Q9Y4H2 1338 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 PRAMEF1O95521 474 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 RAG1P15918 1043 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 PRKCAP17252 672 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 CYP4F8P98187 520 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 PWP1Q13610 501 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 PARP2Q9UGN5 583 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 SRRDQ9UH36 339 aa6.54□□□□□ -1.36
SMC4-220ENST00000488017 NUDT19A8MXV4 375 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 FFAR3O14843 346 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 IGFBP6P24592 240 aaPredicted RBP6.53□□□□□ -1.36
SMC4-220ENST00000488017 PSMD2Q13200 908 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 SNW1Q13573 536 aaKnown RBP6.53□□□□□ -1.36
SMC4-220ENST00000488017 KIR3DS1Q14943 382 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 RTP5Q14D33 572 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 ARSHQ5FYA8 562 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 EAF1Q96JC9 268 aaPredicted RBP6.53□□□□□ -1.36
SMC4-220ENST00000488017 ERVK13-1Q9NX77 482 aa6.53□□□□□ -1.36
SMC4-220ENST00000488017 F6X3S4 739 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 CTSHP09668 335 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 PFKLP17858 780 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 GBP2P32456 591 aaPredicted RBP6.52□□□□□ -1.37
SMC4-220ENST00000488017 MAPKAPK2P49137 400 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 SLURP1P55000 103 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 NR1I3Q14994 352 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 SNAP47Q5SQN1 464 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 RPTNQ6XPR3 784 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 SLC16A11Q8NCK7 471 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 NUP43Q8NFH3 380 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 SORCS2Q96PQ0 1159 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 PRDM14Q9GZV8 571 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 CHST7Q9NS84 486 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 GMIPQ9P107 970 aa6.52□□□□□ -1.37
SMC4-220ENST00000488017 PRICKLE3O43900 615 aaPredicted RBP6.51□□□□□ -1.37
SMC4-220ENST00000488017 ZNF205O95201 554 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 BMP8BP34820 402 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 CCNFP41002 786 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 NCKAP1LP55160 1127 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 PLEKHN1Q494U1 663 aaPredicted RBP6.51□□□□□ -1.37
SMC4-220ENST00000488017 CDCP2Q5VXM1 449 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 ZC3H14Q6PJT7 736 aaKnown RBP6.51□□□□□ -1.37
SMC4-220ENST00000488017 FAM196AQ6ZSG2 479 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 GOLM1Q8NBJ4 401 aa6.51□□□□□ -1.37
SMC4-220ENST00000488017 ROBO2Q9HCK4 1378 aa6.5□□□□□ -1.37
SMC4-220ENST00000488017 K7ESM1 405 aa6.5□□□□□ -1.37
SMC4-220ENST00000488017 ATE1O95260 518 aa6.5□□□□□ -1.37
SMC4-220ENST00000488017 CEBPAP49715 358 aaPredicted RBP6.5□□□□□ -1.37
SMC4-220ENST00000488017 TARBP2Q15633 366 aaKnown RBP6.5□□□□□ -1.37
SMC4-220ENST00000488017 ZNF827Q17R98 1081 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms