RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 USP31Q70CQ4 1352 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PRAMEF22A3QJZ6 481 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 HEXIM1O94992 359 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CLTAP09496 248 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CD44P16070 742 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 SF3A3Q12874 501 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 RTN1Q16799 776 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 AKAP4Q5JQC9 854 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CDKAL1Q5VV42 579 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 ELOA2Q8IYF1 753 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 MMGT1Q8N4V1 131 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 ANKS4BQ8N8V4 417 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 SPATA4Q8NEY3 305 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 TCP11Q8WWU5 503 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 RUBCNQ92622 972 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 IFIH1Q9BYX4 1025 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 NUTM2BA6NNL0 878 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NUTM2EB1AL46 878 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PDE2AO00408 941 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ACTN4O43707 911 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MRPL12P52815 198 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MDM2Q00987 491 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TCP11X2Q5H9J9 407 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC63Q8NA47 563 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TAF4BQ92750 862 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PAGE5Q96GU1 130 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ATP6V1G3Q96LB4 118 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 EPB41L5Q9HCM4 733 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 LRWD1Q9UFC0 647 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 LIMA1Q9UHB6 759 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SRPRBQ9Y5M8 271 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MON2Q7Z3U7 1717 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 GPAA1O43292 621 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 IGKV5-2P06315 115 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 EPB41P11171 864 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SARSP49591 514 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 HERVK_113P62684 666 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NBPF9Q3BBW0 867 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ANKRD13DQ6ZTN6 518 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 USP49Q70CQ1 688 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 GPIHBP1Q8IV16 184 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 HDAC7Q8WUI4 952 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SYMPKQ92797 1274 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 HVCN1Q96D96 273 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 THOC1Q96FV9 657 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 METTL22Q9BUU2 404 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 KIF9Q9HAQ2 790 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SNX12Q9UMY4 172 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MYH8P13535 1937 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ZC3H4Q9UPT8 1303 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ESYT3A0FGR9 886 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 GMNCA6NCL1 334 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ENO4A6NNW6 628 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 KIF4AO95239 1232 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MOCS3O95396 460 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PARP1P09874 1014 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PBX1P40424 430 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 IL15P40933 162 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ANTXR2P58335 489 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TBC1D8BQ0IIM8 1120 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NR5A1Q13285 461 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 CFAP221Q4G0U5 840 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TDRD12Q587J7 1177 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC178Q5BJE1 867 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NT5DC1Q5TFE4 455 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NFRKBQ6P4R8 1299 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 RUFY4Q6ZNE9 571 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 FUKQ8N0W3 1084 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TTC5Q8N0Z6 440 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 UBLCP1Q8WVY7 318 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 APPBP2Q92624 585 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 EPSTI1Q96J88 318 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 TMEM87BQ96K49 555 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NHEJ1Q9H9Q4 299 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 LUC7LQ9NQ29 371 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SMARCAL1Q9NZC9 954 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 VPS54Q9P1Q0 977 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PSMA7O14818 248 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 RNMTO43148 476 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 IDH1O75874 414 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 BMP15O95972 392 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 MMP1P03956 469 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 NBPF20Q3BBV1 942 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 CAPRIN2Q6IMN6 1127 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 ZNF579Q8NAF0 562 aaKnown RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SMCR8Q8TEV9 937 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-209ENST00000487188 FAXDC2Q96IV6 333 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 BATF3Q9NR55 127 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 RWDD2AQ9UIY3 292 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 PLAAQ9Y263 795 aa6.93□□□□□ -1.3
VPS13D-209ENST00000487188 SH2B2O14492 632 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 BACH1O14867 736 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CCNHP51946 323 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 RNASE9P60153 205 aaKnown RBP6.92□□□□□ -1.3
VPS13D-209ENST00000487188 TNNC1P63316 161 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 CUL4BQ13620 913 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 WLSQ5T9L3 541 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 TYW1BQ6NUM6 668 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 LMOD2Q6P5Q4 547 aa6.92□□□□□ -1.3
VPS13D-209ENST00000487188 MB21D1Q8N884 522 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms