RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 POTEFA5A3E0 1075 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 ZBED4O75132 1171 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 CYP2B6P20813 491 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 IRF5Q13568 498 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 NECTIN1Q15223 517 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 IFIT1BQ5T764 474 aaKnown RBP17.32■□□□□ 0.36
USP4-212ENST00000486549 PRPF38BQ5VTL8 546 aaKnown RBP17.32■□□□□ 0.36
USP4-212ENST00000486549 FAM160B2Q86V87 743 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 CPXCR1Q8N123 301 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 PNMA1Q8ND90 353 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 REPS2Q8NFH8 660 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 PXYLP1Q8TE99 480 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 CHURC1Q8WUH1 139 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 SOCS4Q8WXH5 440 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 GPCPD1Q9NPB8 672 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 GJD2Q9UKL4 321 aa17.32■□□□□ 0.36
USP4-212ENST00000486549 PDHBP11177 359 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 STAT3P40763 770 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 RNF20Q5VTR2 975 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 SNRNP48Q6IEG0 339 aaKnown RBP17.31■□□□□ 0.36
USP4-212ENST00000486549 TTBK2Q6IQ55 1244 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 SHCBP1Q8NEM2 672 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 RAVER2Q9HCJ3 691 aaKnown RBP17.31■□□□□ 0.36
USP4-212ENST00000486549 ZNF214Q9UL59 606 aaPredicted RBP17.31■□□□□ 0.36
USP4-212ENST00000486549 CENPFP49454 3210 aa17.31■□□□□ 0.36
USP4-212ENST00000486549 ERICH2A1L162 156 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 IFIT3O14879 490 aaKnown RBP17.3■□□□□ 0.36
USP4-212ENST00000486549 PTPREP23469 700 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 SLC16A2P36021 539 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 SNAP25P60880 206 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 MORN1Q5T089 497 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 RIOX2Q8IUF8 465 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 MB21D2Q8IYB1 491 aaPredicted RBP17.3■□□□□ 0.36
USP4-212ENST00000486549 ANKS1AQ92625 1134 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 TEX13BQ9BXU2 312 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 MROH8Q9H579 483 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 SLC38A10Q9HBR0 1119 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 PRR12Q9ULL5 1215 aa17.3■□□□□ 0.36
USP4-212ENST00000486549 RBBP6Q7Z6E9 1792 aaKnown RBP17.3■□□□□ 0.36
USP4-212ENST00000486549 ZNF236Q9UL36 1845 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 SLC15A5A6NIM6 579 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 SLC25A27O95847 323 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 GOLGA8HP0CJ92 632 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 EN2P19622 333 aaPredicted RBP17.29■□□□□ 0.36
USP4-212ENST00000486549 RGS2P41220 211 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 ANTXR2P58335 489 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 ZNF543Q08ER8 600 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 SART3Q15020 963 aaKnown RBP17.29■□□□□ 0.36
USP4-212ENST00000486549 SEC23AQ15436 765 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 CCDC174Q6PII3 467 aa17.29■□□□□ 0.36
USP4-212ENST00000486549 ZNFX1Q9P2E3 1918 aaKnown RBP17.29■□□□□ 0.36
USP4-212ENST00000486549 PRC1O43663 620 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 PLA2G6O60733 806 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 REC8O95072 547 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 INHAP05111 366 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 SNHG28P0DPA3 235 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 MAP2K5Q13163 448 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 GRB14Q14449 540 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 WTAPQ15007 396 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 TMEM67Q5HYA8 995 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 SYDE2Q5VT97 1194 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 USP6NLQ92738 828 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 APBA2Q99767 749 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 SENP2Q9HC62 589 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 RIPK3Q9Y572 518 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 PDE4DIPQ5VU43 2346 aa17.28■□□□□ 0.36
USP4-212ENST00000486549 KIAA0100Q14667 2235 aaKnown RBP17.27■□□□□ 0.36
USP4-212ENST00000486549 GJB1P08034 283 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 FDX1P10109 184 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 ZKSCAN1P17029 563 aaPredicted RBP17.27■□□□□ 0.36
USP4-212ENST00000486549 ADORA2AP29274 412 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 COPB2P35606 906 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 COL9A3Q14050 684 aaPredicted RBP17.27■□□□□ 0.36
USP4-212ENST00000486549 MTFR1Q15390 333 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 CCL14Q16627 93 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 RASEFQ8IZ41 740 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 TRIB2Q92519 343 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 MMP19Q99542 508 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 RNF208Q9H0X6 261 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 CPVLQ9H3G5 476 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 HOMER2Q9NSB8 354 aa17.27■□□□□ 0.36
USP4-212ENST00000486549 ATP2A1O14983 1001 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 STRNO43815 780 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 HMGCRP04035 888 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 PARP1P09874 1014 aaKnown RBP17.26■□□□□ 0.35
USP4-212ENST00000486549 FCER1AP12319 257 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 MCM5P33992 734 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 OAZ1P54368 228 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 TRIM32Q13049 653 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 GPATCH4Q5T3I0 446 aaKnown RBP17.26■□□□□ 0.35
USP4-212ENST00000486549 BTNL9Q6UXG8 535 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 DPP9Q86TI2 863 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 AGBL1Q96MI9 1066 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 UBA5Q9GZZ9 404 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 GPHNQ9NQX3 736 aaPredicted RBP17.26■□□□□ 0.35
USP4-212ENST00000486549 PLXNA1Q9UIW2 1896 aa17.26■□□□□ 0.35
USP4-212ENST00000486549 ZNF536O15090 1300 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 XRCC5P13010 732 aaKnown RBP17.25■□□□□ 0.35
USP4-212ENST00000486549 CCL5P13501 91 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 TAL1P17542 331 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms