RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DIRC2Q96SL1 478 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 ZMYM5Q9UJ78 669 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 INPP5FQ9Y2H2 1132 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 ZNF451Q9Y4E5 1061 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 A0A1W2PQH9 124 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 USP2O75604 605 aaPredicted RBP6.58□□□□□ -1.36
VPS41-213ENST00000485955 YBX3P16989 372 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS41-213ENST00000485955 ZNF445P59923 1031 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 DUSP4Q13115 394 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 CRTC3Q6UUV7 619 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 SPPL2CQ8IUH8 684 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 BRF1Q92994 677 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 HHIPL1Q96JK4 782 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 NSUN3Q9H649 340 aaKnown RBP6.58□□□□□ -1.36
VPS41-213ENST00000485955 PCDHB10Q9UN67 800 aa6.58□□□□□ -1.36
VPS41-213ENST00000485955 VAV1P15498 845 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 CD247P20963 164 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 BMP8BP34820 402 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 CEBPAP49715 358 aaPredicted RBP6.57□□□□□ -1.36
VPS41-213ENST00000485955 CHRNEQ04844 493 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 LILRA2Q8N149 483 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 FAM169BQ8N8A8 192 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 ANKS4BQ8N8V4 417 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 SEC16BQ96JE7 1060 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 MAP6Q96JE9 813 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 FAM84AQ96KN4 292 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 CCSER2Q9H7U1 834 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 GP6Q9HCN6 339 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 PRR13Q9NZ81 148 aa6.57□□□□□ -1.36
VPS41-213ENST00000485955 CBFA2T2O43439 604 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 ZNF205O95201 554 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 ERCC5P28715 1186 aaPredicted RBP6.56□□□□□ -1.36
VPS41-213ENST00000485955 KSR1Q8IVT5 923 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 SIRT2Q8IXJ6 389 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 CPLX3Q8WVH0 158 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 SMARCC1Q92922 1105 aaPredicted RBP6.56□□□□□ -1.36
VPS41-213ENST00000485955 DSCC1Q9BVC3 393 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 GPR160Q9UJ42 338 aa6.56□□□□□ -1.36
VPS41-213ENST00000485955 YBX2Q9Y2T7 364 aaKnown RBP6.56□□□□□ -1.36
VPS41-213ENST00000485955 H0Y8X5 98 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 KRT1P04264 644 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 ATF4P18848 351 aaPredicted RBP6.55□□□□□ -1.36
VPS41-213ENST00000485955 KIR2DL1P43626 348 aaPredicted RBP6.55□□□□□ -1.36
VPS41-213ENST00000485955 KIR2DL2P43627 348 aaPredicted RBP6.55□□□□□ -1.36
VPS41-213ENST00000485955 KIR3DS1Q14943 382 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 PPP2R5EQ16537 467 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 GNPTABQ3T906 1256 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 RTP2Q5QGT7 225 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 NOL9Q5SY16 702 aaKnown RBP6.55□□□□□ -1.36
VPS41-213ENST00000485955 CEP128Q6ZU80 1094 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 NLRX1Q86UT6 975 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 C19orf47Q8N9M1 422 aaKnown RBP6.55□□□□□ -1.36
VPS41-213ENST00000485955 TMEM52Q8NDY8 209 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 KLHL6Q8WZ60 621 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 PLCD4Q9BRC7 762 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 CDADC1Q9BWV3 514 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 SLC12A9Q9BXP2 914 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 AP5S1Q9NUS5 200 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 ERVK13-1Q9NX77 482 aa6.55□□□□□ -1.36
VPS41-213ENST00000485955 FADS2P1A8MWK0 482 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 NRDCO43847 1150 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 GSNP06396 782 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 TCF3P15923 654 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 RBM25P49756 843 aaKnown RBP6.54□□□□□ -1.36
VPS41-213ENST00000485955 SNX17Q15036 470 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 SYDE1Q6ZW31 735 aaPredicted RBP6.54□□□□□ -1.36
VPS41-213ENST00000485955 FIBCD1Q8N539 461 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 OR6P1Q8NGX9 317 aa6.54□□□□□ -1.36
VPS41-213ENST00000485955 CWC22Q9HCG8 908 aaKnown RBP6.54□□□□□ -1.36
VPS41-213ENST00000485955 DCP1AQ9NPI6 582 aaPredicted RBP6.54□□□□□ -1.36
VPS41-213ENST00000485955 KRTAP4-8A0A0G2JLE6 195 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 CASP7P55210 303 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 RTP1P59025 263 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 SLC14A2Q15849 920 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 ANAPC16Q96DE5 110 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 INTS4Q96HW7 963 aaKnown RBP6.53□□□□□ -1.36
VPS41-213ENST00000485955 FCRL2Q96LA5 508 aaPredicted RBP6.53□□□□□ -1.36
VPS41-213ENST00000485955 SLC38A3Q99624 504 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 HAUS7Q99871 368 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 NOL6Q9H6R4 1146 aaKnown RBP6.53□□□□□ -1.36
VPS41-213ENST00000485955 PHAXQ9H814 394 aaKnown RBP6.53□□□□□ -1.36
VPS41-213ENST00000485955 TNFRSF10DQ9UBN6 386 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 FHOD1Q9Y613 1164 aa6.53□□□□□ -1.36
VPS41-213ENST00000485955 EPHX1P07099 455 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 GSTM1P09488 218 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 SLC7A5Q01650 507 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 FBXO15Q8NCQ5 510 aaPredicted RBP6.52□□□□□ -1.37
VPS41-213ENST00000485955 ADCY4Q8NFM4 1077 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 FCRL3Q96P31 734 aaPredicted RBP6.52□□□□□ -1.37
VPS41-213ENST00000485955 KLHL25Q9H0H3 589 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 EPB41L4BQ9H329 900 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 CAPN10Q9HC96 672 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 SUSD2Q9UGT4 822 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 GPR55Q9Y2T6 319 aaPredicted RBP6.52□□□□□ -1.37
VPS41-213ENST00000485955 SLC12A7Q9Y666 1083 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 MRVI1Q9Y6F6 885 aa6.52□□□□□ -1.37
VPS41-213ENST00000485955 C1QTNF9P0C862 333 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 ITGA4P13612 1032 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 SDHBP21912 280 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 PPP2R5DQ14738 602 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms